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Ah, neat! Ok, will give this a go!
Thanks a bunch
Trisanna Sprung-Much
Research Associate
McGill University
MD Anderson Cancer Centre
--
From: <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of "Douglas N. Greve"
<dgr...@mgh.harvard.edu>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Thursday, March 25, 2021 at 11:36 AM
To: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] make_average_subject without Talairach transform
If you have the transform in the form of an LTA file, I think all you need to
do is put it in the subject/mri/transforms folder, then spec --xfrom your.lta
when running make_average_subject
On 3/25/2021 11:33 AM, Trisanna Sprung-Much wrote:
External Email - Use Caution
External Email - Use Caution
Hi Doug
The scans were registered (6 parameter) to a common chimp template prior to
input to recon-all. The surfaces have reconstructed nicely and match the input
volumes.
I would now like to create an average surface from these surfaces that are “in
the space of the average chimp volume”.
Trisanna
--
From:
<freesurfer-boun...@nmr.mgh.harvard.edu><mailto:freesurfer-boun...@nmr.mgh.harvard.edu>
on behalf of "Douglas N. Greve"
<dgr...@mgh.harvard.edu><mailto:dgr...@mgh.harvard.edu>
Reply-To: Freesurfer support list
<freesurfer@nmr.mgh.harvard.edu><mailto:freesurfer@nmr.mgh.harvard.edu>
Date: Thursday, March 25, 2021 at 11:24 AM
To: "freesurfer@nmr.mgh.harvard.edu"<mailto:freesurfer@nmr.mgh.harvard.edu>
<freesurfer@nmr.mgh.harvard.edu><mailto:freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] make_average_subject without Talairach transform
If you don't have a transform, how will you align the subjects into a common
space?
On 3/25/2021 10:19 AM, Trisanna Sprung-Much wrote:
External Email - Use Caution
External Email - Use Caution
Hi there
I’d like to know if it is possible to create an average volume and average
surface of several subjects without having to incorporate the Talairach
transform and no transform at all.
Thank you,
Trisanna Sprung-Much
Research Associate
McGill University
MD Anderson Cancer Centre
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