Hi,
I am using Matlab R2014a, and FS7.1.0
and receiving this error when I try to run -localGI. Is there a package I might
be missing? Or am I using an outdated version of Matlab?
=================
mris_smooth -nw -n 30
/mnt/V/Datasets/BSNIP2/Processing/Finished/24015_S5437DFD_ASSET/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-main
./lh.pial-outer-smoothed
=================
smoothing for 30 iterations
smoothing surface tessellation for 30 iterations...
smoothing complete - recomputing first and second fundamental forms...
=================
mris_euler_number ./lh.pial-outer-smoothed
=================
euler # = v-e+f = 2g-2: 61554 - 184656 + 123104 = 2 --> 0 holes
F =2V-4: 123104 = 123108-4 (0)
2E=3F: 369312 = 369312 (0)
total defect index = 0
=================
mris_convert -n lh.pial-outer-smoothed
/mnt/V/Datasets/BSNIP2/Processing/Finished/24015_S5437DFD_ASSET/surf/tmp-mris_compute_lgi-lh.pial/lh.pial-outer-smoothed-normals.asc
=================
=================
find_corresponding_center_FSformat('lh.pial','lh.pial-outer-smoothed',100,'/mnt/V/Datasets/BSNIP2/Processing/Finished/24015_S5437DFD_ASSET/surf/tmp-mris_compute_lgi-lh.pial','/tmp/mrc_30700_.m');
exit
=================
< M A T L A B (R) >
Copyright 1984-2014 The MathWorks, Inc.
R2014a (8.3.0.532) 64-bit (glnxa64)
February 11, 2014
.
.
.
To get started, type one of these: helpwin, helpdesk, or demo.
For product information, visit
http://secure-web.cisco.com/19tcoYq0b9VO4ndLxRqJ8z0rI8AoZ3PjjUlX3NMoW1hFDf9ttZf6sacIdCRKlGFtZmegJWn70rcpkiwHSkFXvvbQOHH177lUt_yW-pC9sSqpOioPl75kS4whrNmvis7o2T33ZU5Gv0WbTPhvV7Io8oSJ6trWPIbAw6pNHbZO7BOe_5BzQ9rBX4PCemrDYBA7lrmjStJB4tithcTY6M7UpKz21q5HvSWus7YdzRnacG5y3y_b6MdREEqwYThfXN3Oj2o1HC9-miVTQpE7AjxNNyw/http%3A%2F%2Fwww.mathworks.com.
>> Warning: Input argument must be a string.
> In ver at 41
In freesurfer_read_surf at 70
In find_corresponding_center_FSformat at 26
Error using fprintf
Function is not defined for 'struct' inputs.
Error in freesurfer_read_surf (line 70)
fprintf('FREESURFER_READ_SURF [v %s]\n',ver(11:15));
Error in find_corresponding_center_FSformat (line 26)
[mesh_pial.vertices, mesh_pial.faces] = freesurfer_read_surf(pial);
>>
ERROR: find_corresponding_center_FSformat did not complete successfully!
Command exited with non-zero status 1
@#@FSTIME 2021:05:11:17:18:12 mris_compute_lgi N 2 e 31.58 S 6.20 U 53.23 P
188% M 1319608 F 0 R 1468406 W 0 c 71733 w 7023 I 8832 O 30496 L 17.98 17.99
18.00
@#@FSLOADPOST 2021:05:11:17:18:44 mris_compute_lgi N 2 17.35 17.83 17.95
Linux Gamma 3.16.0-4-amd64 #1 SMP Debian 3.16.7-ckt25-2+deb8u3 (2016-07-02)
x86_64 GNU/Linux
recon-all -s 24015_S5437DFD_ASSET exited with ERRORS at Tue May 11 17:18:44 EDT
2021
For more details, see the log file
/mnt/V/Datasets/BSNIP2/Processing/Finished/24015_S5437DFD_ASSET/scripts/recon-all.log
To report a problem, see
http://secure-web.cisco.com/1tb0Ac8lCR6JdEw2vyP10SJNFvPDfcz-cQZjb7S8SDNovcHCASZ0ejX-iVoBNkur1EemshwyuuYVhC1g2gQDPTOlKTLP_pUKrzO7iFGxZfxieeZkSMxV2Re8Simd716uBVxefYTUs5w5s0UeeaqZRMQ_XTeSeG9OoigTxYckc3jS3NhIsMo10zR55S4l_Hor3dLwqvoJ8bkFjNt7alnwyI1ZSKuy6r6-iNb8eTD--RhD_GkzvNdsXCms8klaaNBbRvRKG56tTdIxa_tmotWtHaw/http%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FBugReporting
Victor Zeng
Beth Israel Deaconess Medical Center
Keshavan Lab
--
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