Hi Jim and Luis - The only change between versions of recon-all that would mess
things up for TRACULA would be if the IDs of the structures in the aparc+aseg
changed (e.g., the left thalamus changed from 10 to 100) or a new structure got
added to the aparc+aseg that wasn't there in the previous version or a
structure got removed. As far as I know, this hasn't happened (the recon-all
crew can correct me if I'm wrong). So using the output from an older version of
recon-all when running a newer version of trac-all should be fine.
Since we now also recommend the thalamic nuclei segmentation for the latest
version of TRACULA (when tracts that terminate or neighbor the thalamus are of
interest), as Jim said you can always just run the thalamic nuclei segmentation
on top of your existing recon-all output.
Best,
Anastasia.
________________________________
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Alvarado,Luis R
<luis.alvar...@louisville.edu>
Sent: Sunday, October 31, 2021 6:22 AM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>;
dimitriosalexopou...@wustl.edu <dimitriosalexopou...@wustl.edu>
Subject: Re: [Freesurfer] Tracula 7.2 using older structural outputs
External Email - Use Caution
External Email - Use Caution
Hi all,
I am also curious about this question.
Can you run TRACULA 7.2 using the outputs from FS 6.0 and 7.1.1?
If so, is it ok to run the new segmentThalamicNuclei.sh and segmentBS.sh 7.2
scripts on FS 6.0 recon data and feed that to TRACULA 7.2?
Best,
Luis R. Alvarado
Graduate Student Fellow
Department of Anatomical Sciences and Neurobiology
University of Louisville
Kentucky Spinal Cord Injury Research Center
220 Abraham Flexner Way, Suite 1500
Louisville, KY 40202
________________________________
From: Alexopoulos, Dimitrios <dimitriosalexopou...@wustl.edu>
Sent: Tuesday, August 24, 2021 2:00 PM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] Tracula 7.2 using older structural outputs
External Email - Use Caution
HI,
Can you run Tracula 7.2 using older structural outputs generated with FS 6.0
and 7.1.1?
Jim
________________________________
The materials in this message are private and may contain Protected Healthcare
Information or other information of a sensitive nature. If you are not the
intended recipient, be advised that any unauthorized use, disclosure, copying
or the taking of any action in reliance on the contents of this information is
strictly prohibited. If you have received this email in error, please
immediately notify the sender via telephone or return mail.
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Mass General Brigham
Compliance HelpLine at http://www.massgeneralbrigham.org/complianceline . If
the e-mail was sent to you in error but does not contain patient information,
please contact the sender and properly dispose of the e-mail.
Please note that this e-mail is not secure (encrypted). If you do not wish to
continue communication over unencrypted e-mail, please notify the sender of
this message immediately. Continuing to send or respond to e-mail after
receiving this message means you understand and accept this risk and wish to
continue to communicate over unencrypted e-mail.
