External Email - Use Caution Hi Eugenio -
Thanks for your reply. We have a Linux Tech. He installed it for me. Should I reinstall the runtime ? Thanks, Alan On Tue, Oct 18, 2022 at 2:59 PM Iglesias Gonzalez, Juan E. < jiglesiasgonza...@mgh.harvard.edu> wrote: > Dear Alan, > How did you install the runtime? Did you follow the instructions in the > wiki? > Cheers, > /Eugenio > > Juan Eugenio Iglesias > http://secure-web.cisco.com/1-F2deM4oNalZVW-blsG0oWLgbKUPi9lklFoUJexQqa87w6TBW80F65uV3keXC_JNnhNLjdgs5T3DVG3xGEMIgcb7cMHk2Q_ALBFO9Oi6RrXZyCulsv9K8E_IWAPqNCnI1vFAlkCEf71E98zI0kcYlNH6bHeV9q3ASpBGrbdZM55ULbrYFlerLR3edJIPeSOZkReV7GSq0OlTnO8h6R0G38zKEZdDh-2r98CGtXw-xmmNTNyKlT9K-tpnOb9wFWu5viucqTNIlnzPhcp5yWDmDwUuQyb8g50ui9YFgpCNoMSrr0WMSkbg9zqr7LxhdyS4/http%3A%2F%2Fwww.jeiglesias.com > > > On Oct 18, 2022, at 2:37 PM, Alan Francis <alandarkene...@gmail.com> > wrote: > > External Email - Use Caution > > Hi Eugenio - > > Hope all is well. I am running FS 7.2. I have installed the MATLAB Runtime > 2014b. However when I run the thalamic segmentation routine I get this > error. Please help. > > Thanks, > > Alan > > copernicus:~/IMAGING> segmentThalamicNuclei.sh 973770 > Setting ITK threads to 1 > #-------------------------------------------- > #@# Thalamic Nuclei processing Tue Oct 18 12:25:06 PM CDT 2022 > ------------------------------------------ > Setting up environment variables > --- > LD_LIBRARY_PATH is > .:/usr/local/freesurfer/MCRv84//runtime/glnxa64:/usr/local/freesurfer/MCRv84//bin/glnxa64:/usr/local/freesurfer/MCRv84//sys/os/glnxa64:/usr/local/freesurfer/MCRv84//sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/usr/local/freesurfer/MCRv84//sys/java/jre/glnxa64/jre/lib/amd64/server:/usr/local/freesurfer/MCRv84//sys/java/jre/glnxa64/jre/lib/amd64/client:/usr/local/freesurfer/MCRv84//sys/java/jre/glnxa64/jre/lib/amd64: > /usr/local/freesurfer/bin/SegmentThalamicNuclei: error while loading > shared libraries: libicudata.so.52: cannot open shared object file: No such > file or directory > Command exited with non-zero status 127 > @#@FSTIME 2022:10:18:12:25:06 run_SegmentThalamicNuclei.sh N 14 e 0.01 S > 0.00 U 0.00 P 33% M 2256 F 11 R 621 W 0 c 1 w 25 I 1776 O 0 L 0.69 0.22 0.07 > @#@FSLOADPOST 2022:10:18:12:25:06 run_SegmentThalamicNuclei.sh N 14 0.69 > 0.22 0.07 > 127 > Linux copernicus 5.15.0-50-generic #56-Ubuntu SMP Tue Sep 20 13:23:26 UTC > 2022 x86_64 x86_64 x86_64 GNU/Linux > > Thalamic nuclei exited with ERRORS at Tue Oct 18 12:25:06 PM CDT 2022 > > For more details, see the log file > /home/alanfrancis/IMAGING/FREESURFER_SUBJECTS//973770/scripts/thalamic-nuclei-mainFreeSurferT1.log > > -- > *|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|* > > > > * Alan N. Francis PhD Assistant Professor of Neuroscience Institute of > Neuroscience* > *University of Texas, School of Medicine* > > *Rio Grande Valley * > > *Texas. * > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://secure-web.cisco.com/1dcj-BzJLyEQbAoLDl-AORDYJnJQk7Su2FB3XDELq0lvbgXs0iyD9QDYS3uUYkaR57iCkr9k5JpCm3RT_GYbUelprUD4-u8v_80DpagIxkAzSoG3m4EA-zkcNvgbmgLiS4EH03O0AWT4bM4xabmVddR5A-boWm9dn9EtcJmJuHizvD8hNbkHm5fvK_kloSqyJoKXxzZcsHEybxbCaa2ZqgEY5rabdV_fDFlWgkiseXd8Tk2qy6EEbaEFGmDidrpe_w-F1ZAC54UTr-xOuMjQEGhpvzvAS8RTqWorlVHfoHx6U8WfRdyU-3l5TdXiGzTvi/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://secure-web.cisco.com/1dcj-BzJLyEQbAoLDl-AORDYJnJQk7Su2FB3XDELq0lvbgXs0iyD9QDYS3uUYkaR57iCkr9k5JpCm3RT_GYbUelprUD4-u8v_80DpagIxkAzSoG3m4EA-zkcNvgbmgLiS4EH03O0AWT4bM4xabmVddR5A-boWm9dn9EtcJmJuHizvD8hNbkHm5fvK_kloSqyJoKXxzZcsHEybxbCaa2ZqgEY5rabdV_fDFlWgkiseXd8Tk2qy6EEbaEFGmDidrpe_w-F1ZAC54UTr-xOuMjQEGhpvzvAS8RTqWorlVHfoHx6U8WfRdyU-3l5TdXiGzTvi/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > The information in this e-mail is intended only for the person to whom it > is addressed. If you believe this e-mail was sent to you in error and the > e-mail contains patient information, please contact the Mass General > Brigham Compliance HelpLine at > https://secure-web.cisco.com/17syaqcYSukhUookgZ6KARz8Ax2rshXxV5vfnqCnBiJTT2uG7nNrJNfYtxrin1-z378v3kUhCvKTnaO2Jf5SrYjJp4yxCWpcNV3T_O6lig2fQYeHLoU8vJpe87mJpoNLDyIOnmGX4i5hC3JbW5xIwcaTvO2AfWWs0UiR8FYl3GrpALO3Su1EWohiIYrXGfqYvF7GMfiZz3ZiDqiIsP-t3LAu8smfJCD5jLmvCXFtnwCTjGuzqZEb7Zgt10RS9rK5snGqmiRmcgNZWwLaZySSoBY0TUtH15CXmnjiTR2iG4269GYSfTJOkkWsX-ELkvFsy/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline > < > https://secure-web.cisco.com/17syaqcYSukhUookgZ6KARz8Ax2rshXxV5vfnqCnBiJTT2uG7nNrJNfYtxrin1-z378v3kUhCvKTnaO2Jf5SrYjJp4yxCWpcNV3T_O6lig2fQYeHLoU8vJpe87mJpoNLDyIOnmGX4i5hC3JbW5xIwcaTvO2AfWWs0UiR8FYl3GrpALO3Su1EWohiIYrXGfqYvF7GMfiZz3ZiDqiIsP-t3LAu8smfJCD5jLmvCXFtnwCTjGuzqZEb7Zgt10RS9rK5snGqmiRmcgNZWwLaZySSoBY0TUtH15CXmnjiTR2iG4269GYSfTJOkkWsX-ELkvFsy/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline> > . > -- *|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|* *Alan N. Francis PhDAssistant Professor of NeuroscienceInstitute of Neuroscience* *University of Texas, School of Medicine* *Rio Grande Valley* *Texas.*
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