External Email - Use Caution Thank you for your quick response!
On 2022/11/01 7:41, Fischl, Bruce R.,PHD wrote: > Yes, that should be fine > > -----Original Message----- > From: freesurfer-boun...@nmr.mgh.harvard.edu > <freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Ryosuke Hayashi > Sent: Monday, October 31, 2022 6:31 PM > To: freesurfer <freesurfer@nmr.mgh.harvard.edu> > Subject: [Freesurfer] About recon-all -i option > > External Email - Use Caution > > Dear All, > > Hi. I have a question about the -i option for "recon-all". > According to the explanation on the following page, the -i option specifies > DICOM and NIfTI files, but is it OK to specify a mgz file with the -i option? > https://secure-web.cisco.com/1UYHLpktzY4BG51M3Fy6Hmuwp2mf6dniSilXbYvOmS82WjhKdh8iiq9gMWVVJThLUSFTSlD14B54-KAPPJ8ZGjZiE8zvcXbbgxox63BCQue7POmRMT4Uec0pvHwDXRum_7zCd4-M4hlzO1amdbEbjNq76FokwYxdftMEPdLX7DHPLq4VCQogDBKo9qe6q8mKUR6CFUMwSuDj7q11dJZf9dvM4gHyLsWjj6vB_mRwS7oLVKHXNzjwOlqnHNkSlBfeb2ZlqRn8zKBfXABumC1KKW06irHB9dIlfqLHbeC-TPSc2DHi26RarpndrKq3SI20o/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2Frecon-all%23Specifyinput > > I want to create a generic script file that calls NIfTI and mgz files as > follows. > recon-all -subject $SUBJECTS_ID -i $IMAGE_FILE -all > > Thank you, > ryo > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://secure-web.cisco.com/15-tKdDRqsbGUGAiVKygVMgFCgq5ZRUkLO5lXb7yTA_nXNA4uFIj4d1IjxQFfK6FiAK_83OY7gUGbck3dTXx4n_GTb9voxM2IOmKBLs1ponuhvsR8cxpunyahC7e7ex5ldC0g2nYsALOo1zo90OnXOlpvBOcLwf813WYHrqxxl3Nx9OUjMPnV4NhXgxvVEr9VBQ0hnvYm2llO8WqAzH4K6h9nfbosEYY4iTxQ-etyGwujZYCuaHz-nzpyQQxVQACye7dPRq6nXtcgxwg-9NGfCQg5Ap3AX-pDdnOOxCl9BsjW3cw0MbrAtvJlQ2h_s2mL/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://secure-web.cisco.com/15-tKdDRqsbGUGAiVKygVMgFCgq5ZRUkLO5lXb7yTA_nXNA4uFIj4d1IjxQFfK6FiAK_83OY7gUGbck3dTXx4n_GTb9voxM2IOmKBLs1ponuhvsR8cxpunyahC7e7ex5ldC0g2nYsALOo1zo90OnXOlpvBOcLwf813WYHrqxxl3Nx9OUjMPnV4NhXgxvVEr9VBQ0hnvYm2llO8WqAzH4K6h9nfbosEYY4iTxQ-etyGwujZYCuaHz-nzpyQQxVQACye7dPRq6nXtcgxwg-9NGfCQg5Ap3AX-pDdnOOxCl9BsjW3cw0MbrAtvJlQ2h_s2mL/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the > e-mail contains patient information, please contact the Mass General Brigham > Compliance HelpLine at > https://secure-web.cisco.com/1_0NO7mG0YzgpxoHm-7cvuv5NFvzWJh65gkkiuAYazYmHbKm7PIvSCz7ZeNQANR-b-AgTq5cWIxjKgi3HDicuV-hFmiFLjg_bDaOS-VKCTakQ36iO9pp13QYvfqTp9z9GO4LFNDRsxQvMBC6eCE0Ewir7cE4rcG3MCbTz0MPSbaKp9O2tz5eAeq-JNh-kE1nXbRq_NsDfVLal_cKwniU9_E2oAzbbNMdQGlYOyzeoPfIQTGIBf0sPlZijfSjY06SP7P8viGPYiGCBQKyx12tk2g3CDl_jqHH1aBMtCCQLibMIeGubrPHHnDhKz_otyGlV/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline > > <https://secure-web.cisco.com/1_0NO7mG0YzgpxoHm-7cvuv5NFvzWJh65gkkiuAYazYmHbKm7PIvSCz7ZeNQANR-b-AgTq5cWIxjKgi3HDicuV-hFmiFLjg_bDaOS-VKCTakQ36iO9pp13QYvfqTp9z9GO4LFNDRsxQvMBC6eCE0Ewir7cE4rcG3MCbTz0MPSbaKp9O2tz5eAeq-JNh-kE1nXbRq_NsDfVLal_cKwniU9_E2oAzbbNMdQGlYOyzeoPfIQTGIBf0sPlZijfSjY06SP7P8viGPYiGCBQKyx12tk2g3CDl_jqHH1aBMtCCQLibMIeGubrPHHnDhKz_otyGlV/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline> > . > Please note that this e-mail is not secure (encrypted). If you do not wish > to continue communication over unencrypted e-mail, please notify the sender > of this message immediately. Continuing to send or respond to e-mail after > receiving this message means you understand and accept this risk and wish to > continue to communicate over unencrypted e-mail. > -- ATR脳情報解析研究所 計算脳イメージング研究室 Ryosuke Hayashi(mailto:rhaya...@atr.jp) TEL:0774-95-1217(直通) 内線:1217 _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at https://www.massgeneralbrigham.org/complianceline <https://www.massgeneralbrigham.org/complianceline> . Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
