It looks like the anatomical analysis is out of sync with the functional
analysis. Is is possible that you ran the functional analysis, then
edited the subject, then tried to rerun the analysis? If so, try running
preproc-sess with -force to redo all the preprocessing.
On 12/1/2022 12:45 PM, std...@virgilio.it wrote:
External Email - Use Caution
I would extract the rs-fMRI timeseries from Yeo’s Network components.
I’m running:
preproc-sess -s ${1} -fsd rest -sliceorder up -surface self lhrh -fwhm
0 -per-runfcseed-config -wm -fcname wm.dat -fsd rest -pca -cfg
wm.config fcseed-sess -s ${1} -cfg wm.configfcseed-config -vcsf
-fcname vcsf.dat -fsd rest -pca -cfg vcsf.configfcseed-sess -s ${1}
-cfg vcsf.config
mkanalysis-sess -analysis fc.noseed.surf.lh -surface self lh -fwhm 0
-notask -nuisreg vcsf.dat 5 -nuisreg wm.dat 5 -polyfit 5 -nskip 4
-mcextreg -fsd rest -TR 1.67 -per-run -hpf 0.01 -lpf 0.1 -nowhiten
mkanalysis-sess -analysis fc.noseed.surf.rh -surface self rh -fwhm 0
-notask -nuisreg vcsf.dat 5 -nuisreg wm.dat 5 -polyfit 5 -nskip 4
-mcextreg -fsd rest -TR 1.67 -per-run -hpf 0.01 -lpf 0.1 -nowhiten
The line below produced this error:
selxavg3-sess -s ${1} -a fc.noseed.surf.lh -no-con-ok -svres
Saving rho1
ERROR: fast_mat2vol: szvol inconsistent with mat2d nv = 151008,
size(mat,2) = 142954 run 2 t= 1.6reading data ...
0.518631Temporally filteringSaving rho1
ERROR: fast_mat2vol: szvol inconsistent with mat2d nv = 151008,
size(mat,2) = 142954Found 0 voxels with corrected AR1 > 0.90Not
WhiteningFound 8054 zero-valued voxelsComputing contrasts
The res folder in fc.noseed.surf.lh or fc.noseed.surf.rh contains
res-001.nii.gz 158KB
res-002.nii.gz 158KB
that cannot be opended.
Stefano
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