External Email - Use Caution
I have resolved by eliminating the option -nowhiten
It looks like the anatomical analysis is out of sync with the functional
analysis. Is is possible that you ran the functional analysis, then edited the
subject, then tried to rerun the analysis? If so, try running preproc-sess with
-force to redo all the preprocessing.On 12/1/2022 12:45 PM, std...@virgilio.it
wrote:
> External Email - Use Caution I would extract the rs-fMRI timeseries
> from Yeo’s Network components. I’m running: preproc-sess -s ${1} -fsd rest
> -sliceorder up -surface self lhrh -fwhm 0 -per-runfcseed-config -wm -fcname
> wm.dat -fsd rest -pca -cfg wm.config fcseed-sess -s ${1} -cfg
> wm.configfcseed-config -vcsf -fcname vcsf.dat -fsd rest -pca -cfg
> vcsf.configfcseed-sess -s ${1} -cfg vcsf.config mkanalysis-sess -analysis
> fc.noseed.surf.lh -surface self lh -fwhm 0 -notask -nuisreg vcsf.dat 5
> -nuisreg wm.dat 5 -polyfit 5 -nskip 4 -mcextreg -fsd rest -TR 1.67 -per-run
> -hpf 0.01 -lpf 0.1 -nowhiten mkanalysis-sess -analysis fc.noseed.surf.rh
> -surface self rh -fwhm 0 -notask -nuisreg vcsf.dat 5 -nuisreg wm.dat 5
> -polyfit 5 -nskip 4 -mcextreg -fsd rest -TR 1.67 -per-run -hpf 0.01 -lpf 0.1
> -nowhitenThe line below produced this error: selxavg3-sess -s ${1} -a
> fc.noseed.surf.lh -no-con-ok -svres Saving rho1 ERROR: fast_mat2vol: szvol
> inconsistent with mat2d nv = 151008, size(mat,2) = 142954 run 2 t=
> 1.6reading data ... 0.518631Temporally filteringSaving rho1 ERROR:
> fast_mat2vol: szvol inconsistent with mat2d nv = 151008, size(mat,2) =
> 142954Found 0 voxels with corrected AR1 > 0.90Not WhiteningFound 8054
> zero-valued voxelsComputing contrastsThe res folder in fc.noseed.surf.lh or
> fc.noseed.surf.rh contains res-001.nii.gz 158KB res-002.nii.gz 158KB that
> cannot be opended. Stefano
>
>
>
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