Hi Aaron,
I think you can do this using mri_binarize
(https://surfer.nmr.mgh.harvard.edu/fswiki/mri_binarize).
‘—min’ and ‘—max’ let you specify the intensity range of the voxels you would
like include. Use ‘—binval’ specify the value to set for those voxels.
Hope this helps.
Best,
Yujing
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Aaron Tanenbaum
Sent: Wednesday, December 14, 2022 12:51 PM
To: Freesurfer <Freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] create a mgz with one value
External Email - Use Caution
Hello,
I am trying to generate a mgz with identical header and dimensions as another
mgz file. However I would like all voxels to be set to one value. What is the
best way to do this?
Thank you
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