you can also do it with mri_volsynth
mri_volsynth --temp yourfile.mgz --pdf const --val-a your val --o
yournewfile.mgz
On 12/15/2022 9:12 AM, Huang, Yujing wrote:
Hi Aaron,
I think you can do this using mri_binarize
(https://surfer.nmr.mgh.harvard.edu/fswiki/mri_binarize).
‘—min’ and ‘—max’ let you specify the intensity range of the voxels
you would like include. Use ‘—binval’ specify the value to set for
those voxels.
Hope this helps.
Best,
Yujing
*From:* freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> *On Behalf Of *Aaron Tanenbaum
*Sent:* Wednesday, December 14, 2022 12:51 PM
*To:* Freesurfer <Freesurfer@nmr.mgh.harvard.edu>
*Subject:* [Freesurfer] create a mgz with one value
* External Email - Use Caution *
Hello,
I am trying to generate a mgz with identical header and dimensions as
another mgz file. However I would like all voxels to be set to one
value. What is the best way to do this?
Thank you
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