what are you trying to do? This is for viewing the registration between
two volumes. One of the volumes is obtained from the subject, but you
need to specify the other volume on the command line (eg, --mov fmri.nii.gz)
On 10/3/2023 3:18 PM, Viktorija Pratuseviciute wrote:
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I tried adding the –no-surfs (e.g. tkregisterfv --s PI163_noflair
--no-surfs),however receive the below error message:
ERROR: must spec a moveable volume
Many thanks,
Viki
*From: *freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Douglas N. Greve
<dgr...@mgh.harvard.edu>
*Date: *Monday, July 31, 2023 at 3:39 PM
*To: *freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
*Subject: *Re: [Freesurfer] Tkregister2 GUI not responding fully
* External Email - Use Caution *
Try adding --no-surfs
On 7/24/2023 12:45 PM, Viktorija Pratuseviciute wrote:
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Thank you very much! We did try the command tkregisterfv --s PI163
–fstal, however the recon-all processing fails before a
surf/lh.white file is created and therefore an error is produced
that this file can’t be found. Seems like with tkregisterfv the
default is for it to require the lh.white file?
Many thanks,
Viki
*From: *freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu>
<mailto:freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of
Douglas N. Greve <dgr...@mgh.harvard.edu>
<mailto:dgr...@mgh.harvard.edu>
*Date: *Friday, July 21, 2023 at 6:28 AM
*To: *freesurfer@nmr.mgh.harvard.edu
<freesurfer@nmr.mgh.harvard.edu>
<mailto:freesurfer@nmr.mgh.harvard.edu>
*Subject: *Re: [Freesurfer] Tkregister2 GUI not responding fully
* External Email - Use Caution *
tkregister2 is pretty old at this point; try using tkregsiterfv
with the same option.
On 7/20/2023 7:06 PM, Viktorija Pratuseviciute wrote:
* External Email - Use Caution *
Hello,
We are trying to process a scan with a failed talairach. We
have been able to visualize the misalignment and attempted to
use the following command (tkregister2 --s PI163 –fstal) to
manual adjust the talairach.xfm based on the tutorial
(FsTutorial/Talairach_freeview).
The tkregister2 GUI opens up, however only certain functions
work: I can switch between target and moveable, I can also
double click on sliding scales to switch coronal, saggital and
horizontal views, however I am not able to move any of the
sliders including the rotate or translate brain and hence
unable to fix the talairach. Is there a way to fix this issue?
Or an alternative way to fix the bad talairach output?
We are using freesurfer/7.3.1 and have attempted the command
on our server command line on both mac and windows with same
results.
Many thanks,
Viki
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