On Jul 30, 2011, at 4:58 AM, Peter Cock wrote: > > On Saturday, July 30, 2011, Shantanu Pavgi <pa...@uab.edu> wrote: > > > > The -V option is not for verbose mode but for exporting your > > shell environment. Refer to qsub manual for details: > > "Specifies that all environment variables active within the > > qsub utility be exported to the context of the job." > > We are already using it in our configuration as needed. > > That is such a common need it would be great to have > it in the Galaxy documentation as an example of using > native SGE options with drmaa:// in universe_wsgi.ini > Plus the http://linux.die.net/man/5/sge_complex link. > > Thanks! > > > I think we are having problem with the galaxy (or drmaa > > Python lib) parsing correct drmaa/SGE messages and > > not with the drmaa URL configuration. Thoughts? > > I'd try adding a few debug log/print statements to the > code to try and diagnose it. > > Peter
The option is the same for Torque/PBS as well. We'll have the chance (or misfortune depending on how you look at it) of testing both SGE and Torque locally. chris ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
