On Nov 29, 2011, at 9:35 PM, Smithies, Russell wrote: > Found the cure – just required adding urllib2.ProxyHandler in the data_source > tools. > Why doesn’t Galaxy pick up the system http_proxy variables?
Hi Russell, Thanks for tracking down the problem. Could you send a patch for this? --nate > > --Russell Smithies > > > From: galaxy-dev-boun...@lists.bx.psu.edu > [mailto:galaxy-dev-boun...@lists.bx.psu.edu] On Behalf Of Smithies, Russell > Sent: Wednesday, 30 November 2011 9:09 a.m. > To: galaxy-dev@lists.bx.psu.edu > Subject: [galaxy-dev] proxy settings? > > I’m new to Galaxy so I’m not sure if this a Galaxy or linux/apache question . > > When I try to “Get Data” from UCSC or any other external site, I get a 407 > error from our proxy as I need to authenticate. > Is the request going out as the ‘galaxy’ user or ‘apache’ or the user that’s > logged in? > I already have http_proxy and ftp_proxy configured in /etc/profile (we’re > running Centos 6) but I assume there a correct place to configure this for > Galaxy? > > The error message I’m seeing is: > An error occurred running this job: The remote data source application may be > off line, please try again later. Error: ('http error', 407, 'Proxy Access > Denied', <httplib.HTTPMessage instance at 0x35d2998>) > > Any ideas? > > Thanx, > > Russell Smithies > > > > Attention: The information contained in this message and/or attachments from > AgResearch Limited is intended only for the persons or entities to which it > is addressed and may contain confidential and/or privileged material. Any > review, retransmission, dissemination or other use of, or taking of any > action in reliance upon, this information by persons or entities other than > the intended recipients is prohibited by AgResearch Limited. If you have > received this message in error, please notify the sender immediately. > > > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > > http://lists.bx.psu.edu/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
