Hi Nate, My "solution" was a bit of a hack and there may be better ways of doing it (I haven't read all the docs yet - just started with Galaxy last week) Python is not my strong suit and there may be more elegant ways, but here's how I usually connect thru our proxy:
---------------------------------- proxy_info = { 'user' : 'DOMAIN\\username', 'pass' : 'thisismypassword', 'host' : "proxy.yoyodyne.com", 'port' : 8080 } # build a new opener that uses a proxy requiring authorization proxy_support = urllib2.ProxyHandler({"http" : "http://%(user)s:%(pass)s@%(host)s:%(port)d" % proxy_info}) opener = urllib2.build_opener(proxy_support, urllib2.HTTPHandler) # install it urllib2.install_opener(opener) #then open the page with urllib2 page = urllib2.urlopen( cur_URL ) ---------------------------------- I was in a hurry so tweaked data_source.py, fetch.py, genomespace_file_browser.py, ucsc_proxy.py, and upload.py but it would make more sense to read the proxy_info from universe_wsgi.ini If you can point me at an example of a tool that reads from the config, I'll try and put it together. The best solution would be for Python to pick up the local $http_proxy env settings but I've never managed to get that working! --Russell > -----Original Message----- > From: Nate Coraor [mailto:n...@bx.psu.edu] > Sent: Friday, 2 December 2011 7:03 a.m. > To: Smithies, Russell > Cc: galaxy-dev@lists.bx.psu.edu > Subject: Re: [galaxy-dev] proxy settings? > > On Nov 29, 2011, at 9:35 PM, Smithies, Russell wrote: > > > Found the cure - just required adding urllib2.ProxyHandler in the > data_source tools. > > Why doesn't Galaxy pick up the system http_proxy variables? > > Hi Russell, > > Thanks for tracking down the problem. Could you send a patch for this? > > --nate > > > > > --Russell Smithies > > > > > > From: galaxy-dev-boun...@lists.bx.psu.edu > > [mailto:galaxy-dev-boun...@lists.bx.psu.edu] On Behalf Of Smithies, > > Russell > > Sent: Wednesday, 30 November 2011 9:09 a.m. > > To: galaxy-dev@lists.bx.psu.edu > > Subject: [galaxy-dev] proxy settings? > > > > I'm new to Galaxy so I'm not sure if this a Galaxy or linux/apache question > > . > > > > When I try to "Get Data" from UCSC or any other external site, I get a 407 > error from our proxy as I need to authenticate. > > Is the request going out as the 'galaxy' user or 'apache' or the user that's > logged in? > > I already have http_proxy and ftp_proxy configured in /etc/profile (we're > running Centos 6) but I assume there a correct place to configure this for > Galaxy? > > > > The error message I'm seeing is: > > An error occurred running this job: The remote data source application > > may be off line, please try again later. Error: ('http error', 407, > > 'Proxy Access Denied', <httplib.HTTPMessage instance at 0x35d2998>) > > > > Any ideas? > > > > Thanx, > > > > Russell Smithies > > > > > > > > Attention: The information contained in this message and/or attachments > from AgResearch Limited is intended only for the persons or entities to which > it is addressed and may contain confidential and/or privileged material. Any > review, retransmission, dissemination or other use of, or taking of any action > in reliance upon, this information by persons or entities other than the > intended recipients is prohibited by AgResearch Limited. If you have received > this message in error, please notify the sender immediately. > > > > > > > > > __________________________________________________________ > _ > > Please keep all replies on the list by using "reply all" > > in your mail client. To manage your subscriptions to this and other > > Galaxy lists, please use the interface at: > > > > http://lists.bx.psu.edu/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/