Hi Nate,
My "solution" was a bit of a hack and there may be better ways of doing it (I
haven't read all the docs yet - just started with Galaxy last week)
Python is not my strong suit and there may be more elegant ways, but here's how
I usually connect thru our proxy:
----------------------------------
proxy_info = {
'user' : 'DOMAIN\\username',
'pass' : 'thisismypassword',
'host' : "proxy.yoyodyne.com",
'port' : 8080
}
# build a new opener that uses a proxy requiring authorization
proxy_support = urllib2.ProxyHandler({"http" :
"http://%(user)s:%(pass)s@%(host)s:%(port)d" % proxy_info})
opener = urllib2.build_opener(proxy_support, urllib2.HTTPHandler)
# install it
urllib2.install_opener(opener)
#then open the page with urllib2
page = urllib2.urlopen( cur_URL )
----------------------------------
I was in a hurry so tweaked data_source.py, fetch.py,
genomespace_file_browser.py, ucsc_proxy.py, and upload.py but it would make
more sense to read the proxy_info from universe_wsgi.ini
If you can point me at an example of a tool that reads from the config, I'll
try and put it together.
The best solution would be for Python to pick up the local $http_proxy env
settings but I've never managed to get that working!
--Russell
> -----Original Message-----
> From: Nate Coraor [mailto:n...@bx.psu.edu]
> Sent: Friday, 2 December 2011 7:03 a.m.
> To: Smithies, Russell
> Cc: galaxy-dev@lists.bx.psu.edu
> Subject: Re: [galaxy-dev] proxy settings?
>
> On Nov 29, 2011, at 9:35 PM, Smithies, Russell wrote:
>
> > Found the cure - just required adding urllib2.ProxyHandler in the
> data_source tools.
> > Why doesn't Galaxy pick up the system http_proxy variables?
>
> Hi Russell,
>
> Thanks for tracking down the problem. Could you send a patch for this?
>
> --nate
>
> >
> > --Russell Smithies
> >
> >
> > From: galaxy-dev-boun...@lists.bx.psu.edu
> > [mailto:galaxy-dev-boun...@lists.bx.psu.edu] On Behalf Of Smithies,
> > Russell
> > Sent: Wednesday, 30 November 2011 9:09 a.m.
> > To: galaxy-dev@lists.bx.psu.edu
> > Subject: [galaxy-dev] proxy settings?
> >
> > I'm new to Galaxy so I'm not sure if this a Galaxy or linux/apache question
> > .
> >
> > When I try to "Get Data" from UCSC or any other external site, I get a 407
> error from our proxy as I need to authenticate.
> > Is the request going out as the 'galaxy' user or 'apache' or the user that's
> logged in?
> > I already have http_proxy and ftp_proxy configured in /etc/profile (we're
> running Centos 6) but I assume there a correct place to configure this for
> Galaxy?
> >
> > The error message I'm seeing is:
> > An error occurred running this job: The remote data source application
> > may be off line, please try again later. Error: ('http error', 407,
> > 'Proxy Access Denied', <httplib.HTTPMessage instance at 0x35d2998>)
> >
> > Any ideas?
> >
> > Thanx,
> >
> > Russell Smithies
> >
> >
> >
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