Hi, I have locally installed galaxy on a linux(ubuntu) machine. I have not installed all the tools on the local galaxy server. I am not able to integrate MACS peak calling tool with galaxy. I have followed all the instructions for installation of MACS and it is running fine on the commandline(standalone is fine).But with galaxy it is giving the following error: "An error occurred running this job: /bin/sh: macs: not found" I have tried executing the macs_wrapper.py in the commandline and I have got the following error: "Traceback (most recent call last): File "macs_wrapper.py", line 135, in <module> if __name__ == "__main__": main() File "macs_wrapper.py", line 45, in main options = simplejson.load( open( sys.argv[1] ) ) IndexError: list index out of range"
I have set the PYTHONPATH(i.e PYTHONPATH=~/galaxy-dist/lib) and I have macs in PATH. I am not a technical/computer expert as well, hence I would appreciate if any one could help me resolve this problem & tell me where I am going wrong Thanks in advance Regards ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/