On Thu, Feb 9, 2012 at 11:27 PM, Andrew Warren <anwar...@vbi.vt.edu> wrote: > Hello, > > I was recently adjusting advanced parameters when running Tophat in Galaxy > and noticed that when advanced parameters are used, every field is converted > and submitted as command line parameter to the tool at runtime. Without > changing any of the default values I get a different tophat result than if > advanced parameters are left off.
That sounds like a bug in the wrapper. > I'm curious if the Galaxy team has > considered a mechanism for disabling an individual parameter? Or perhaps a > way of individually enabling parameters from within the Advanced Parameter > block? > > Just trying to think of a way to use one advanced parameter without using > all of them. > > Cheers, > Andrew Warren This should be possible using optional parameters, as of: https://bitbucket.org/galaxy/galaxy-central/issue/403/ https://bitbucket.org/galaxy/galaxy-central/issue/661/ Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
