Hi,
On 26.03.2012 17:14, Nate Coraor wrote:
On Mar 22, 2012, at 12:30 PM, Alfonso Núñez Salgado wrote:
Hi Andreas:
As far as I know Galaxy is designed to manage its own users and not to be
integrated in any other platform. I think that the idea is to use galaxy as
another user of your system.
Hi Alfonso,
Andreas is referring to recent changes that allow jobs to run as users other
than the single Galaxy user that started the server process. See:
http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Cluster#Submitting_Jobs_as_the_Real_User
Yes, that's what I wanted.
On 20/03/12 16:31, Andreas Kuntzagk wrote:
Hi,
I (re-)installed galaxy on our server and managed to set it up to run jobs
through our cluster (GridEngine). It's also running behind an Apache proxy now.
But now I'm wondering how to setup to have the cluster jobs run as the real
cluster users. I found the documentation on this topic a little thin.
We use NIS for managing users and passwords across the cluster. How do I
connect that to Galaxy?
regards, Andreas
Andreas,
You'll need to have Apache authenticate your users, as explained here:
http://wiki.g2.bx.psu.edu/Admin/Config/Apache%20Proxy
For NIS without Kerberos, you'd probably need to use mod_auth_pam to
authenticate through your system's PAM stack.
Thanks, I will look into it.
regards, Andreas
--nate
--
=====================================
Alfonso Núñez Salgado
Unidad de Bioinformática
Centro de Biologia Molecular Severo Ochoa
C/Nicolás Cabrera 1
Universidad Autónoma de Madrid
Cantoblanco, 28049 Madrid (Spain)
Phone: (34) 91-196-4633
Fax: (34) 91-196-4420
web: http://ub.cbm.uam.es/
=====================================
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
http://lists.bx.psu.edu/
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
http://lists.bx.psu.edu/
--
Andreas Kuntzagk
SystemAdministrator
Berlin Institute for Medical Systems Biology at the
Max-Delbrueck-Center for Molecular Medicine
Robert-Roessle-Str. 10, 13125 Berlin, Germany
http://www.mdc-berlin.de/en/bimsb/BIMSB_groups/Dieterich
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
http://lists.bx.psu.edu/
