Le 27/03/2012 11:03, Louise-Amélie Schmitt a écrit :
Le 26/03/2012 16:13, Nate Coraor a écrit :
On Mar 26, 2012, at 5:11 AM, Louise-Amélie Schmitt wrote:
Hello everyone,
I wanted to start the drmaa job runner and followed the instructions
in the wiki, but I have this error message when I start Galaxy:
galaxy.jobs ERROR 2012-03-23 15:28:49,845 Job runner is not
loadable: galaxy.jobs.runners. drmaa
Traceback (most recent call last):
File "/g/funcgen/galaxy/lib/galaxy/jobs/__init__.py", line 1195,
in _load_plugin
module = __import__( module_name )
ImportError: No module named drmaa
I checked /g/funcgen/galaxy/lib/galaxy/jobs/runners and it contains
the drmaa.py file
There was no drmaa egg so I made a copy of it from our other Galaxy
install but it didn't solve the problem.
I don't really know where to start looking, any idea?
Thanks,
L-A
Hi L-A,
There's an errant space in the runner name: ' drmaa'. I am going to
guess that your start_job_runners looks like:
start_job_runners = pbs, drmaa
Only the whitespace at the beginning and end of that parameter is
stripped. I've committed a fix for this that'll be in the next
galaxy-dist, but in the meantime, remove the space after the comma
and the drmaa runner should load.
--nate
Hi Nate,
After a removing the space (and a facepalm) it now fetches the drmaa
egg and starts the module properly, thanks a lot!
I still have an issue though: When I use the run shell script Galaxy
crashes right before loading the drmaa runner (right after the pbs
runner is loaded). The weird thing is that when I launch the command
manually it works fine:
python ./scripts/paster.py serve universe_wsgi.runner.ini
--server-name=runner0 --pid-file=runner0.pid --log-file=runner0.log
--daemon
The other weird thing is that I get no error message at all.
I'll try looking into it but if you have any idea about what's going
wrong, it would help greatly :)
Thanks again,
L-A
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Ok it looks like I didn't notice the changes in the start scripts and
since we use two custom copies of run.sh the code was outdated. I
corrected that and it now seems to work properly.
Best,
L-A
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