On Oct 17, 2012, at 3:53 PM, Carlos Borroto <carlos.borr...@gmail.com> wrote:
> On Mon, Oct 15, 2012 at 11:49 AM, Liisa Koski <liisa.ko...@basf.com> wrote:
>> Hello,
>> I've installed a tool to my local Galaxy installation via my local ToolShed.
>> I would like to run this tool locally, and not have it submitted to the
>> grid.
>>
>> I have tried two ids in the universe_wsgi.ini [galaxy:tool_runners] section.
>>
>> The tool id directly from the tool.xml file and the id from the
>> shed_tool_conf.xml (same id found in the integrated_tool_panel.xml)
>>
>> tool = local:///
>> galaxy.server:9009/repos/user/tool/1.0 = local:///
>>
>>
>> My job still gets submitted to the grid.
>>
>
> Hi,
>
> I would also like to specify a tool_runner for a tool installed from
> the shed_tool. As Liisa, I can not find the correct tool id to use.
>
> Any help?
> Thanks,
> Carlos
My local one is set up like this and it works (for augustus):
toolshed.g2.bx.psu.edu/repos/bjoern-gruening/augustus/augustus/0.1 =
pbs:///default/-l ncpus=1,mem=8gb,walltime=24:00:00/
The above is the path in within the shed repo.
chris
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