I created the index but that did not change anything... I had sent James Taylor the schema as he requested, but I never heard anything so I guess he must not have found anything weird...
I am waiting to move my Galaxy server off to a three server configuration, so I am hoping the problem will not return, although your issue does not bode well for this issue... Regards, Thon de Boer, Ph.D. Bioinformatics Guru +1-650-799-6839 thondeb...@me.com LinkedIn Profile On Oct 23, 2012, at 4:14 AM, Hans-Rudolf Hotz <h...@fmi.ch> wrote: > Hi Thon > > Sorry for re-activating an old e-mail thread. I am just curious, whether > Nate's suggestion solved your problem? > > > After our upgrade (from the "March 12th changeset 6799:40f1816d6857" to the > "October 5th changeset 7824:b5bda7a5c345") we see long delays in the jobs > going from queued to running. > > > For our server, switching from "set_metadata_externally = False" to > "set_metadata_externally = True" did not speed up anything. > > Regards, Hans-Rudolf > > > On 09/19/2012 04:27 PM, Nate Coraor wrote: >> On Sep 18, 2012, at 6:31 PM, Anthonius deBoer wrote: >> >>> Hi, >>> >>> Jobs that I start on my in-house Galaxy instance now take up to 3-4 min to >>> go from queued to Running, even though there is nothing much going on on >>> the galaxy server... >>> >>> I have been running this instance since June and use a relatively new >>> version of Galaxy-central (Last update, 22-Aug changeset: >>> 7535:bf6517b2b336) >>> >>> I have noticed that my jobs table in the galaxy Postgres database contains >>> about 60,000 jobs... >>> Could that be the culprit? Does it slow to the complete database to see if >>> there are any jobs that need to run? >>> >>> Could I purge the jobs and related tables to speed up the submissions? >> >> Hi Thon, >> >> It's not really possible to remove things from the database since there are >> a lot of interdependencies. >> >> The first thing to check would be whether set_metadata_externally = True in >> your Galaxy config. >> >> --nate >> >>> >>> Thanks, >>> >>> Thon >>> >>> ___________________________________________________________ >>> Please keep all replies on the list by using "reply all" >>> in your mail client. To manage your subscriptions to this >>> and other Galaxy lists, please use the interface at: >>> >>> http://lists.bx.psu.edu/ >> >> >> ___________________________________________________________ >> Please keep all replies on the list by using "reply all" >> in your mail client. To manage your subscriptions to this >> and other Galaxy lists, please use the interface at: >> >> http://lists.bx.psu.edu/ >>
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