On Mon, Nov 5, 2012 at 6:09 PM, Joel Rosenberg <thisisj...@hotmail.com> wrote: > > Thanks Peter, > > I tried doing something similar, but there wasn't a location in the galaxy > user's > $PATH that would persist across a cluster reboot or could be snapshotted > (like the tools or data volumes). Adding /mnt/galaxyTools/my_dep_binaries > or something to the $PATH would work temporarily, but not past a reboot as > /home/galaxy/.bashrc, /etc/environment, etc are part of the AMI and would be > lost. > > In your cluster, wouldn't the galaxy user's ${HOME}/bin be transient? Are > you running with a different EC2 setup or using a different AMI?
We're running a local cluster with SGE, and that means our $HOME/bin is stable. I hadn't realised this you mentioned EC2/AMI that you might be on a cloud cluster. Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/