What specific errors are you seeing?  Some tools have external dependencies 
that need to be installed.

-Dannon

On Dec 18, 2012, at 11:29 AM, Tilahun Abebe <tilahun.ab...@uni.edu> wrote:

> Hi,
> 
> We installed a local galaxy a couple of days ago following the basic 
> installation instruction (http://wiki.galaxyproject.org/Admin/Get%20Galaxy). 
> The installation went well, all the tools are listed on the left. I can also 
> upload data to Galaxy. However, an error occurs when I try to run RNA-seq 
> analysis. I am thinking the tools are not configured properly. Can you give 
> me tips to configure NGS tools? An example file with setup syntax will help 
> as well.
> 
> Thanks.
> 
> Tilahun
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