Sure, automated data import and workflow execution is certainly possible.  In 
addition to the documentation there are several example scripts in the 
/scripts/api directory of your galaxy install.  In particular, for your use 
case, you may want to have a look at example_watch_folder.py.  This script 
watches a specified folder for any new files, uploads them to a galaxy data 
library, and then triggers the execution of a predefined workflow on the data.  
I wouldn't implement your pipeline exactly like in that script, but it's 
designed to illustrate a few specific examples without being overly complicated.

-Dannon

On Feb 3, 2013, at 10:22 AM, mark.r...@syngenta.com wrote:

> Hey Dannon
> 
> Thanks, the web page I was finding earlier was mostly just an outline.  This 
> is much better. At this point I'm just interested in learning what general 
> capabilities the API can provide.  I'm sure after I read this and think more 
> about it I'll have questions.  One thing I am thinking about is what role the 
> API might play in automatically analyzing data coming off an Illumina MiSeq.  
> This would seem to be attractive in that it might proceed in a timely way, 
> offer the possibility of a greater variety of analyses than come onboard the 
> MiSeq, and place the results in a history that might readily be shared with 
> multiple users.  Does this seem possible?  Do you know of anyone doing this 
> now?
> 
> Thanks again for your help
> 
> Mark
> 
> -----Original Message-----
> From: Dannon Baker [mailto:dannonba...@me.com]
> Sent: Saturday, February 02, 2013 10:57 PM
> To: Rose Mark USRE
> Cc: galaxy-dev@lists.bx.psu.edu
> Subject: Re: [galaxy-dev] galaxy api documentation
> 
> Mark,
> 
> There's documentation currently available here: 
> https://galaxy-dist.readthedocs.org/en/latest/lib/galaxy.webapps.galaxy.api.html
> 
> Is there anything else in particular you're looking for?
> 
> -Dannon
> 
> 
> On Feb 2, 2013, at 9:15 PM, mark.r...@syngenta.com wrote:
> 
>> Hi All
>> 
>> When is it anticipated that the documentation for the API will be available?
>> 
>> Thanks
>> 
>> Mark
>> 
>> 
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> 
> 
> 
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