We also have a python library for dealing with the API, the documentation
is available at http://bioblend.readthedocs.org/
The library source code also contains an example very similar to what
you're trying to achieve: imports a workflow, imports data, and runs the
workflow. Here's that script:
https://github.com/afgane/bioblend/blob/master/docs/examples/run_imported_workflow.py


On Mon, Feb 4, 2013 at 2:38 AM, Dannon Baker <dannonba...@me.com> wrote:

> Sure, automated data import and workflow execution is certainly possible.
>  In addition to the documentation there are several example scripts in the
> /scripts/api directory of your galaxy install.  In particular, for your use
> case, you may want to have a look at example_watch_folder.py.  This script
> watches a specified folder for any new files, uploads them to a galaxy data
> library, and then triggers the execution of a predefined workflow on the
> data.  I wouldn't implement your pipeline exactly like in that script, but
> it's designed to illustrate a few specific examples without being overly
> complicated.
>
> -Dannon
>
> On Feb 3, 2013, at 10:22 AM, mark.r...@syngenta.com wrote:
>
> > Hey Dannon
> >
> > Thanks, the web page I was finding earlier was mostly just an outline.
>  This is much better. At this point I'm just interested in learning what
> general capabilities the API can provide.  I'm sure after I read this and
> think more about it I'll have questions.  One thing I am thinking about is
> what role the API might play in automatically analyzing data coming off an
> Illumina MiSeq.  This would seem to be attractive in that it might proceed
> in a timely way, offer the possibility of a greater variety of analyses
> than come onboard the MiSeq, and place the results in a history that might
> readily be shared with multiple users.  Does this seem possible?  Do you
> know of anyone doing this now?
> >
> > Thanks again for your help
> >
> > Mark
> >
> > -----Original Message-----
> > From: Dannon Baker [mailto:dannonba...@me.com]
> > Sent: Saturday, February 02, 2013 10:57 PM
> > To: Rose Mark USRE
> > Cc: galaxy-dev@lists.bx.psu.edu
> > Subject: Re: [galaxy-dev] galaxy api documentation
> >
> > Mark,
> >
> > There's documentation currently available here:
> https://galaxy-dist.readthedocs.org/en/latest/lib/galaxy.webapps.galaxy.api.html
> >
> > Is there anything else in particular you're looking for?
> >
> > -Dannon
> >
> >
> > On Feb 2, 2013, at 9:15 PM, mark.r...@syngenta.com wrote:
> >
> >> Hi All
> >>
> >> When is it anticipated that the documentation for the API will be
> available?
> >>
> >> Thanks
> >>
> >> Mark
> >>
> >>
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> >
> >
> >
> >
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