Hi Guys,
Thanks for the quick response. I installed the latest blast datatypes
from the toolshed and that fixed the issue.
Peter, can you also fix the $outfile.extra_files_path to
$outfile.files_path on line 5 in the makedb wrapper xml file.
Thanks,
-Raj
On Wednesday, March 20, 2013 10:42:43 AM, Peter Cock wrote:
On Wed, Mar 20, 2013 at 1:55 PM, Peter Cock <p.j.a.c...@googlemail.com> wrote:
On Wed, Mar 20, 2013 at 1:52 PM, Nicola Soranzo <sora...@crs4.it> wrote:
Il giorno mer, 20/03/2013 alle 12.41 +0000, Peter Cock ha scritto:
The patch just removes the MetadataElement call - is that wise?
Hi Peter,
my question instead is, what are they for? With 'name' they have no
meaning.
Looking at the code, I don't see a recent API change regarding
the name:
https://bitbucket.org/galaxy/galaxy-central/history-node/default/lib/galaxy/datatypes/metadata.py?at=default
Is there perhaps a universe_wsgi.ini setting which might be involved,
since I've not seen this error locally?
$ cd lib/galaxy/datatypes/
$ grep 'MetadataElement(' *.py|grep -v name
returns nothing, so the 'name' parameter is really mandatory.
Best,
Nicola
Good question - I'd have to ask Edward what he thought this did,
but you seem to be right that as the code stands this metadata
element is rather pointless.
(I'm still puzzled why we don't see the error here though).
I'll apply your patch and test it locally...
Peter
Nicola - It looks good here, uploaded to the ToolShed as v0.0.15
http://toolshed.g2.bx.psu.edu/view/devteam/blast_datatypes
Raj - Could you apply the update from the ToolShed and
confirm if that fixes the problem for you?
Edward - have you received my direct email off list?
Thanks,
Peter
--
Bio-informatics consultant
QBCG (http://qbcg.uga.edu)
706-542-6092
706-583-0442
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