Dear Peter Thank you for your email.
Yes. This is the file type I mean. Sorry for the typo. Any chance there is a pretty class with appropriate sniff functions etc. somewhere? Currently it looks a little bit like a hack on my side. Thanks a lot for your help Ulf On 11/09/13 10:16, Peter Cock wrote: > On Wed, Sep 11, 2013 at 9:46 AM, Ulf Schaefer <ulf.schae...@phe.gov.uk> wrote: >> Hello all >> >> Has anyone successfully integrated the phylib file type into Galaxy in >> their local install? It's a standard file type for multiple sequence >> alignment and I could not possibly be the only one who want to support >> it in a local install. > > Do you mean phylip with a p at the end? If so try this: > http://toolshed.g2.bx.psu.edu/view/devteam/emboss_datatypes > http://emboss.sourceforge.net/docs/themes/SequenceFormats.html > > Note however there are both strict and relaxed interpretations > of the PHYLIP standard (the original version imposed taxon > name limits), and also both interlaced/interleaved and > sequential forms. > > The EMBOSS repository has "phylipnon" for non-interleaved > (i.e. sequential) PHYLIP format , and "phylip" for either. > > Peter > ************************************************************************** The information contained in the EMail and any attachments is confidential and intended solely and for the attention and use of the named addressee(s). It may not be disclosed to any other person without the express authority of Public Health England, or the intended recipient, or both. If you are not the intended recipient, you must not disclose, copy, distribute or retain this message or any part of it. This footnote also confirms that this EMail has been swept for computer viruses by Symantec.Cloud, but please re-sweep any attachments before opening or saving. http://www.gov.uk/PHE ************************************************************************** ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
