On Oct 14, 2013, at 6:07 AM, Peter Cock wrote: > On Fri, Oct 11, 2013 at 9:12 AM, Peter Cock <p.j.a.c...@googlemail.com> wrote: >> On Thu, Oct 10, 2013 at 8:20 PM, Nate Coraor <n...@bx.psu.edu> wrote: >>> Hi all, >>> >>> The recent changes to the DRMAA runner are for better handling >>> of job-ending conditions under slurm, but it looks like SGE has >>> different behavior when a job finishes. I'll provide a fix for this >>> shortly, in the meantime, it's fine to use a slightly older version >>> of drmaa.py. >>> >>> --nate >> >> Thanks Nate, >> >> So far I've only seen this once so it isn't urgent for me. >> >> Peter > > Hi Nate, > > I see you've fix the name attribute error: > https://bitbucket.org/galaxy/galaxy-central/commits/ff76fd33b81cdde1fb270de688ec5e86488ba34d > > However it seems the underlying problem (job check resulted in: > code 18: The job specified by the 'jobid' does not exist.) is affecting > other people now: > http://lists.bx.psu.edu/pipermail/galaxy-dev/2013-October/017002.html > > Peter
Hi Peter, I'm working on refactoring the DRMAA runner to allow for these different DRM behaviors without duplicating the code. In the interim, I've reverted the change to the DRMAA runner that resulted in the observed behavior in changeset d46b64f12c52. Thanks, --nate ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
