On Tue, Nov 12, 2013 at 3:33 AM, Dave Bouvier <d...@bx.psu.edu> wrote: > Peter, > > Thanks for bringing this to our attention, we're working on fixing a number > of issues with the test framework, and hope to have more information for you > tomorrow. > > --Dave B.
Hi Dave, Good news, the BLAST+ tests appear to have all passed on the Test Tool Shed, http://testtoolshed.g2.bx.psu.edu/view/peterjc/ncbi_blast_plus/f2478dc77ccb Tool test results Automated test environment Time tested: ~ 5 hours ago System: Linux 3.8.0-30-generic Architecture: x86_64 Python version: 2.7.4 Galaxy revision: 11318:7553213e0646 Galaxy database version: 117 Tool shed revision: Tool shed database version: Tool shed mercurial version: Tests that passed successfully Tool id: blastxml_to_tabular Tool version: blastxml_to_tabular Test: test_tool_000000 (functional.test_toolbox.TestForTool_testtoolshed.g2.bx.psu.edu/repos/peterjc/ncbi_blast_plus/blastxml_to_tabular/0.0.11) ... Tool id: ncbi_tblastx_wrapper Tool version: ncbi_tblastx_wrapper Test: test_tool_000000 (functional.test_toolbox.TestForTool_testtoolshed.g2.bx.psu.edu/repos/peterjc/ncbi_blast_plus/ncbi_tblastx_wrapper/0.0.21) Curiously however, this no longer seems to be complaining about the BLAST+ tools without any tests - a new bug? Over on the main Tool Shed, the binary installation seems to be failing (still using the bash script magic - is the test system still missing bash, or is there a different problem here?). Here too, there doesn't seem to be any mention of the tools missing tests. At this point (given it is working on the Test Tool Shed), I think it should be safe to update the BLAST+ packages to use the new architecture/os specific <action> tags (a recent feature which is now supported in the stable Galaxy releases): http://toolshed.g2.bx.psu.edu/view/iuc/package_blast_plus_2_2_26 http://toolshed.g2.bx.psu.edu/view/iuc/package_blast_plus_2_2_27 http://toolshed.g2.bx.psu.edu/view/iuc/package_blast_plus_2_2_28 Any objections? Thanks, Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
