Hello Peter,

There are several "flags" for each repository revision that determine if and 
how the revision is tested.  If tested, flags also detemine which category the 
latest revision falls into when clicking on the links in the Tool Shed's menu.  
One of these flags is "tools_functionally_correct", which was incorrectly set 
on 
http://testtoolshed.g2.bx.psu.edu/view/peterjc/tmhmm_and_signalp/ee10017fcd80 
due to a bug introduced during the reengineering of the Topll Shed's install 
and test framework that I recently did.  This bug was corrected in the 
following change set.

https://bitbucket.org/galaxy/galaxy-central/commits/ca25579a90e97157e32b527e7471cde90e9beed0

I've corrected the setting for the tools_functionally_correct flag for your 
repository so it should no longer be displayed in the "Latest revision: failing 
tool tests" category.

Thanks for letting us know about this, and please let us know if you discover 
other reposiory revisions that require the same correction.

Greg Von Kuster


On Dec 9, 2013, at 5:06 AM, Peter Cock <p.j.a.c...@googlemail.com> wrote:

> Hi Dave & Greg,
> 
> Could you double check how the "Skip automated testing of tools in
> this revision" setting is being used on the Test Tool Shed?
> 
> e.g. 
> http://testtoolshed.g2.bx.psu.edu/view/peterjc/tmhmm_and_signalp/ee10017fcd80
> 
> Test runs
> Automated test environment
> Not tested
> Licensing issues restrict automated tool dependency installation.
> 2013-11-29 17:19:34
> Automated test environment
> Not tested
> Licensing issues restrict automated tool dependency installation.
> 
> (Ticked) Skip automated testing of tools in this revision
> 
> That all looks fine, and it is listed under "Latest revision: skip tool 
> tests".
> 
> However, this tool is also listed under "Latest revision: failing tool tests".
> 
> Regards,
> 
> Peter
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