Hi Peter, Dave B and I just discovered that issue that causes your tests to fail.
The problem lies with our current implementation supporting the <move_directory_files> action tag, which is used in your recipe. This tag ultimately uses Python's os.listdir via shutil.move. It turns out that certain Python versions produce different results from os.listdir - the order is different. This is a problem with MIRA because during the instlllation it is moving a directory of files where the directory includes symlinks to other files in the directory. When the symlinks are moved after the files to which they link, problems occur. Again, this behavior is intermittent depending on the Pyhton version ( and perhaps the os ). In any case, we have a fix for out move_directory_files which Dave is now committing. So your tests should pass with tonight's run - Let's hope! Thanks Peter! Greg Von Kuster On Feb 19, 2014, at 3:49 PM, Peter Cock <p.j.a.c...@googlemail.com> wrote: > On Wed, Feb 19, 2014 at 8:42 PM, Greg Von Kuster <g...@bx.psu.edu> wrote: >> >> Hello Peter, >> Please see below... >> >> ... >> >> Your above email arrived in my inbox at 4:42 AM EST, and >> it looks like your repository in question was not yet tested. > > Ah. That would partly explain things - perhaps coupled with > a cache effect it might even explain why different browsers > seemed to give me different output.... > > Could Galaxy include the time zone (EST) in the Tool Shed > test time stamps and/or show GMT/UTC? (You have no > easy way of knowing the user's local timezone do you?). > > Alternatively, "Test in progress" would be nice :) > > As to the test failure, it seems $INSTALL_DIR or at least > $MIRA4 only contains env.sh (which puzzles me). > > Thanks, > > Peter > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
