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On 07/17/2014 12:31 PM, Peter Cock wrote: > On Thu, Jul 17, 2014 at 6:28 PM, Eric Rasche <rasche.e...@yandex.ru> wrote: >>> Am 17.07.2014 18:51, schrieb Peter Cock: >>>> >>>> One reason I have been meaning to do some of these is familiarity with >>>> many of these formats from looking after/writing parsers in Biopython. >> >> Peter, similar case here with BioPerl. All of my tools can output the >> full range of Bio::SeqIO output formats, so having datatypes would be >> great. Happy to contribute there. > > Sounds good. The EMBOSS, BioPerl and Biopython projects have tried > to adopt consistent file format names (pre-dating the EDAM ontology), > but unfortunately the names adopted in Galaxy sometimes diverge :( The EDAM format looks interesting, as does BioXSD for datatype conversion. Given that EDAM largely covers what's already in galaxy in terms of formats, it's be brilliant to have that over top of datatypes. > > Peter > - -- Eric Rasche Programmer II Center for Phage Technology Texas A&M University College Station, TX 77843 404-692-2048 e...@tamu.edu rasche.e...@yandex.ru -----BEGIN PGP SIGNATURE----- Version: GnuPG v2.0.22 (GNU/Linux) iQIcBAEBAgAGBQJTyArfAAoJEMqDXdrsMcpVHWoQALBCsoI120dZTqiGWxuLbgCo Ni3LBJ8iFLkhf6kGgTxMCBHNDp/RdLv9wLvH6hZ7HCMrVlHJhs0b2lrEQWbXPeKr W6hcWn+8zcAx0Ezr118mD1vgBVL1kfSVkWteeXYToVKFnXjsgmAOLT4eOwWn3M6O PS5pHwqTd0eNbJ5lviR7hgHLNJ68u0NCwxPiKhjZaaXUPw69aBSp2GOfQ4mio8Wv UUAq4KPMB46iDprWOrrNXgg49FKXeX0cXnlwKNPbF9MkPPOci6WW/Ao0NUC9ZAUR BqL1XEZxo/0f/hh2YagoimT6bEjs3XGphGn5HrJ48/q8Eb5x7nt7izjWbbe/jY6n 2u2ioD74YD9txF7wqdcWSPEK7/GMJyRzMLt9xqnP8GBeVBElHIokDngURYj9Obpj bAt26/a0p5YAhgPkqoCueo7Lhclsk8kRHfA3moB+lV0liHbnKVGIRH4uu/x1G0ee UuZLEFS4qe+I8pZJEyMw6y4hQK36RjaBASeSrsXbauSBgpdhPCxvlyzQxtutu9cm gAPZ0g0CLrYYNK3sdKdaMaVYBl1WFce7n4Ac36i+uZX9TYujOVCX1YX7OdGnaEln rBLA7Epz8UWooWR7P0xa7U172cvHbNcYGkKQ7+nk/mMtr4DD4/0nyn3InlO1VAVL 2YsvF1U4eZpTR+2368e8 =Sdgc -----END PGP SIGNATURE----- ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
