Hi Evan, can you install other tools, or is this happening to all tools? Which version are you running?
Thanks for reporting! Bjoern Am 13.06.2015 um 10:59 schrieb Evan Bollig PhD: > Not sure why, but these tools fail to install inside the > docker-galaxy-stable Dockerfile build: > > indel_realigner > unified_genotyper > variant_select > package_bedtools_2_19 > bedtools > > I'm getting errors like these when executing "RUN install-repository": > ############ > [....] > Galaxy is running. > > Processing: --url https://toolshed.g2.bx.psu.edu/ --name > variant_filtration --revision da6e2503c62d --owner devteam > > HTTP Error 500: Internal Server Error > > {"err_msg": "Uncaught exception in exposed API method:", "err_code": 0} > > 2015/06/13 03:56:34 The command [/bin/sh -c install-repository > "--url https://toolshed.g2.bx.psu.edu/ --name variant_filtration > --revision da6e2503c62d --owner devteam"] returned a non-zero code: 1 > ############ > > Any thoughts? > > Cheers, > -E > > -- > Evan F. Bollig, PhD > Scientific Computing Consultant, Application Developer | Research and > User Services (RUS) > Supercomputing Institute for Advanced Computational Research | msi.umn.edu > University of Minnesota | umn.edu > boll0...@umn.edu | 612-624-1447 | Walter Lib Rm 556 > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > https://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ > ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
