By browsing the api code, I discovered library_contents.py that looks like
it should be used. Why this and not folder_contents.py? There seems to be
overlap of these two. I would expect to upload files to folders within
libraries...
On Thu, Jun 25, 2015 at 2:43 PM, Ryan G <ngsbioinformat...@gmail.com> wrote:
> Hi all - I'm trying to figure out how to script the ability to upload data
> (fastq) files to Galaxy via the API.
>
> I can get the Library's root_folder_id, but am unsure of what the API call
> is to upload a file. I'm constructing this dictionary:
>
> data = {}
> data['folder_id'] = galaxyFolderId
> data['create_type'] = 'file'
> data['file_type'] = 'fastq'
> data['upload_option'] = 'upload_paths'
> data['filesystem_paths'] = fileToUpload
> data['link_data_only'] = 'link_to_files'
>
> I assume this is the correct format based on other code I've seen, but I'm
> not sure what the actual submit call should be. 'api/libraries/' or
> 'api/folders'????
>
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