At what galaxy version are you? 2015-06-30 7:36 GMT-05:00 Gildas Le Corguille <lecorgui...@sb-roscoff.fr>:
> Hi, > > We have a problem on our production instances since one or two years > (never found the time to write it and we still hope to find by ourself). > > Some jobs stay in "waiting" status (grey) indefinitely. > > Job ID User Last Update Tool State Inputs Command Line Job Runner > PID/Cluster > ID 63094 f...@bar.fr 10 hours ago > toolshed.g2.bx.psu.edu/repos/devteam/fastq_groomer/fastq_groomer/1.0.4 new > 123250 setting_metadata None None None 63093 f...@bar.fr 10 hours ago > toolshed.g2.bx.psu.edu/repos/devteam/fastq_groomer/fastq_groomer/1.0.4 new > 123249 setting_metadata None None None 63088 f...@bar.fr 14 hours ago > testtoolshed.g2.bx.psu.edu/repos/jjohnson/trinityrnaseq/trinityrnaseq_norm/0.0.2 > new 123250 setting_metadata, 123249 setting_metadata None None None > Our scheduler is SGE. > > We tried to found the origin of this issue : > - there is not relevant clues in the log files > - sometimes, a restart make start those jobs > - sometimes, kill a job make the others start > - sometimes, there is no choice than resubmit > > Is anyone can propose an idea to fix this behaviour ? > > Thanks > > Gildas > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > https://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ >
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