Not the last :/
changeset: 16054:11e14ac45c7e
branch: stable
tag: tip
user: Nate Coraor <n...@bx.psu.edu>
date: Wed Jan 21 16:00:24 2015 -0500
summary: Update tag latest_2015.01.13 for changeset 4039bfd5584a
Gildas
Le 30/06/2015 16:36, Alexander Vowinkel a écrit :
At what galaxy version are you?
2015-06-30 7:36 GMT-05:00 Gildas Le Corguille
<lecorgui...@sb-roscoff.fr <mailto:lecorgui...@sb-roscoff.fr>>:
Hi,
We have a problem on our production instances since one or two
years (never found the time to write it and we still hope to find
by ourself).
Some jobs stay in "waiting" status (grey) indefinitely.
Job ID User Last Update Tool State Inputs Command Line
Job
Runner PID/Cluster ID
63094 f...@bar.fr <mailto:f...@bar.fr> 10 hours ago
toolshed.g2.bx.psu.edu/repos/devteam/fastq_groomer/fastq_groomer/1.0.4
<http://toolshed.g2.bx.psu.edu/repos/devteam/fastq_groomer/fastq_groomer/1.0.4>
new 123250 setting_metadata None None None
63093 f...@bar.fr <mailto:f...@bar.fr> 10 hours ago
toolshed.g2.bx.psu.edu/repos/devteam/fastq_groomer/fastq_groomer/1.0.4
<http://toolshed.g2.bx.psu.edu/repos/devteam/fastq_groomer/fastq_groomer/1.0.4>
new 123249 setting_metadata None None None
63088 f...@bar.fr <mailto:f...@bar.fr> 14 hours ago
testtoolshed.g2.bx.psu.edu/repos/jjohnson/trinityrnaseq/trinityrnaseq_norm/0.0.2
<http://testtoolshed.g2.bx.psu.edu/repos/jjohnson/trinityrnaseq/trinityrnaseq_norm/0.0.2>
new 123250 setting_metadata, 123249 setting_metadata None
None None
Our scheduler is SGE.
We tried to found the origin of this issue :
- there is not relevant clues in the log files
- sometimes, a restart make start those jobs
- sometimes, kill a job make the others start
- sometimes, there is no choice than resubmit
Is anyone can propose an idea to fix this behaviour ?
Thanks
Gildas
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