Hi, I have adopted /mnt/galaxy/galaxy-app/config/job_conf.xml: I added a destination with following param: <param id="nativeSpecification">-N1 --cpus-per-task 1 --mem-per-cpu=4G</param>
Galaxy service was restarted after chaning this. Now I get the error "Unable to run job due to a misconfiguration of the Galaxy job running system. Please contact a site administrator." when I try to run a job. Looking in the log gives: galaxy.jobs.runners.drmaa DEBUG 2015-07-06 22:50:40,187 (493) submitting file /mnt/galaxy/tmp/job_working_directory/000/493/galaxy_493.sh > galaxy.jobs.runners.drmaa DEBUG 2015-07-06 22:50:40,187 (493) native > specification is: -N1 --cpus-per-task 1 --mem-per-cpu=4G > galaxy.jobs.runners.drmaa ERROR 2015-07-06 22:50:40,187 (493) > drmaa.Session.runJob() failed unconditionally > Traceback (most recent call last): > [...] > InvalidAttributeValueException: code 14: Invalid native specification: -N1 > --cpus-per-task 1 --mem-per-cpu=4G Well. running this as galaxy user in the console with $ srun -N1 --cpus-per-task 1 --mem-per-cpu=4G > /mnt/galaxy/tmp/job_working_directory/000/494/galaxy_494.sh , it actually runs good. I was wondering if this is connected with the fact that the log states " galaxy.jobs.runners.drmaa" and not something like galaxy.jobs.runners.slurm, like defined in the job_conf.xml: <plugin id="slurm" type="runner" load="galaxy.jobs.runners.slurm:SlurmJobRunner" /> So - What is going wrong here? Am I working on the wrong job_conf.xml? What does galaxy do here? Thanks for help!Alexander
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