I will make a new package for tbl2asn. Our lab is not too happy that tbl2asn expires and causes lots of issues for us.
On Tue, Sep 29, 2015 at 9:24 AM Peter Cock <p.j.a.c...@googlemail.com> wrote: > On Tue, Sep 29, 2015 at 1:12 PM, Fernandez Edgar > <edgar.fernan...@umontreal.ca> wrote: > > Hello Björn, > > > > Thank you for answering! > > When I installed Prokka from the Galaxy ToolShed, all the dependencies > were installed too. > > tbl2asn is one of those dependencies... > > How would I replace it? > > > > Cordialement / Regards, > > Edgar Fernandez > > The way the NCBI deliberately make tbl2asn expire is very > annoying for packaging and breaks strict reproducibility :( > > I think Bjoern was suggesting manually updating the copy of tbl2asn > which the Tool Shed had downloaded (as a quick short term solution). > You'd need to find this file within the Tool Shed dependencies folder... > > Philip - can you update package_tbl2asn_23_7 or add a new > package if the version number has changed? Or would you like > the IUC group to look after this in future? > > https://toolshed.g2.bx.psu.edu/view/takadonet/package_tbl2asn_23_7/ > > Nicola - once that's done, can you update the prokka dependency > list - or would that fall to your old colleagues at CRS4? > > https://toolshed.g2.bx.psu.edu/view/crs4/prokka/ > > Peter >
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