Hi Cris, yes there is a better channel - it is conda-forge. But it will take you even more time to submit there and a more strict review.
I would encourage you to submit to conda-forge, but for a starter and to not discourage you for the first time experience I recommended bioconda -- here I can assist you more. It up to you, I will try my best to guide you, Bjoern Am 24.01.2017 um 21:27 schrieb Lawrence, Cris W: > Bjoern > > Sorry to be a pest. One other question before I attempt any PR. The > python-irodsclient is not itself a bioinformatics tool - it’s a wrapper > for communicating with iRODS - a data management system and its > dependency, pretty tables, I would surmise, is just a utility. After > reading the bioconda policy, I am wondering whether these items belong > in the bioconda channel. If not, is there a more appropriate channel? > > - Cris > >> On Jan 24, 2017, at 3:09 PM, bjoern.gruen...@googlemail.com >> <mailto:bjoern.gruen...@googlemail.com> <bjoern.gruen...@gmail.com >> <mailto:bjoern.gruen...@gmail.com>> wrote: >> >> This depends on how many others are submitting a package. Sorry it >> takes a while. >> >> >> On Jan 24, 2017 8:40 PM, "Lawrence, Cris W" <cr...@upenn.edu >> <mailto:cr...@upenn.edu>> wrote: >> >> Bjoern: >> >> OK….I am following the recipe submission process, but building in >> travis-ci is taking longer than I would have expected. I am over >> 10 minutes now. Can you give me some idea of how long a travis-ci >> build should take? >> >> - Cris >> >>> On Jan 24, 2017, at 1:05 PM, Björn Grüning >>> <bjoern.gruen...@gmail.com <mailto:bjoern.gruen...@gmail.com>> wrote: >>> >>> Hi Cris, >>> >>> submit what ever you have to bioconda and we will review and >>> merge it. >>> It will end up in anaconda.org <http://anaconda.org/> magically. >>> >>> If you don't want to use bioconda. You need an anaconda account >>> and then >>> use `anaconda login`. But be aware that you need to configure >>> Galaxy to >>> use your package ... bioconda if pre-configured. >>> >>> Hope that helps, >>> Bjoern >>> >>> Am 24.01.2017 um 18:52 schrieb Lawrence, Cris W: >>>> Bjorn: >>>> >>>> Thanks for the tip. I tried to do a conda build python-irodsclient >>>> >>>> BUILD START: python-irodsclient-0.5.0rc1-py27_0 >>>> >>>> updating index in: //anaconda/conda-bld/osx-64 >>>> >>>> updating index in: //anaconda/conda-bld/noarch >>>> >>>> Can't build /Users/crisl-adm/Tools/python-irodsclient due to >>>> unsatisfiable dependencies: >>>> >>>> Package missing in current osx-64 channels: >>>> >>>> - prettytable >=0.7.2 >>>> >>>> >>>> So I tried creating a conda package for prettytable. >>>> >>>> It looked to build OK….but I guess I need to upload it to anaconda >>>> before I can build python-irodsclient. I am an anaconda noob as >>>> well. >>>> Looks like I need a login. Where do I acquire a login? >>>> >>>> - Cris >>>> >>>> >>>> >>>> >>>> >>>>> On Jan 24, 2017, at 11:17 AM, Björn Grüning >>>>> <bjoern.gruen...@gmail.com <mailto:bjoern.gruen...@gmail.com> >>>>> <mailto:bjoern.gruen...@gmail.com >>>>> <mailto:bjoern.gruen...@gmail.com>>> wrote: >>>>> >>>>> Hi Chris, >>>>> >>>>> I guess the easiest and recommended way is to use conda. >>>>> We can help you to create a conda package for irodclient if you >>>>> like. >>>>> >>>>> To get you started see here: >>>>> https://bioconda.github.io/guidelines.html#python >>>>> <https://bioconda.github.io/guidelines.html#python> >>>>> >>>>> Cheers, >>>>> Bjoern >>>>> >>>>> Am 24.01.2017 um 17:02 schrieb Lawrence, Cris W: >>>>>> I am a Galaxy noob trying to write a Galaxy tool that needs to >>>>>> employ >>>>>> the python-irodsclient module. I can install it on my laptop via >>>>>> pip. But I am trying to make it available to Galaxy via planemo. >>>>>> Apparently, this module is not available in the conda >>>>>> channels. How >>>>>> else can I satisfy my dependency? Thanks for any and all help. >>>>>> >>>>>> - Cris ___________________________________________________________ >>>>>> Please keep all replies on the list by using "reply all" in >>>>>> your mail >>>>>> client. To manage your subscriptions to this and other Galaxy >>>>>> lists, >>>>>> please use the interface at: https://lists.galaxyproject.org/ >>>>>> <https://lists.galaxyproject.org/> >>>>>> >>>>>> To search Galaxy mailing lists use the unified search at: >>>>>> http://galaxyproject.org/search/mailinglists/ >>>>>> <http://galaxyproject.org/search/mailinglists/> >> > ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
