Hi Peter,
> "The short answer is that as of 17.01, Galaxy should install Conda > the first time it starts up and be configured to use it by default." yes, it installs everything with conda. So that should work, but I could also set it up my self manually. > You didn't confirm which Ballgown you were trying to use in > Galaxy. Is it this version from Theo Collard: > > https://toolshed.g2.bx.psu.edu/view/theo.collard/ballgown_wrapper/05977e96375b > > If so, this appears to be where he develops it on GitHub, you > could file an issue there: and yes that is the version I'm trying to install. > > https://github.com/CollardT/Ballgown-Wrapper I can contact report the issue on github. It looks like its looking for a variable called dataset with is not defined in the input part. this looks like python code?: ##------------------------------------------------------------------------------------ ## This function returns the name of the sample associated to a given file ##------------------------------------------------------------------------------------ #def get_sample_name($dataset, $sample_mapping): ##If the file with samples mapping was provided #if $sample_mapping != None: #return $sample_mapping.get($dataset.name, None) ##Otherwise with extract the sample name from the filename #else: #return str($dataset.element_identifier) #end if #end def Cheers Jochen ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/
