Hello Tarek,
If you want to reduce the number of identical reads, then please see the
tool "FASTA manipulation -> Collapse sequences". Converting formats
would be necessary, the tool "Tabular-to-FASTA" can perform this operation.
Best,
Jen
Galaxy team
On 8/2/11 3:57 PM, tarek addwebi wrote:
On 8/2/11 3:57 PM, tarek addwebi wrote:
Hi Dear
Is there anybody whom I can share my data with? I have an important
question that I tried to answer, but I could not. Please see the
attachment first, and let us see the first read in the first row. I need
to know how many times I have this read in the whole data. Do I have to
count all reads manually to know the number of this read? It would take
a long time to count 11 million reads. Thank you
___________________________________________________________
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--
Jennifer Jackson
http://usegalaxy.org
http://galaxyproject.org/Support
Hi Dear
Is there anybody whom I can share my data with? I have an important
question that I tried to answer, but I could not. Please see the
attachment first, and let us see the first read in the first row. I need
to know how many times I have this read in the whole data. Do I have to
count all reads manually to know the number of this read? It would take
a long time to count 11 million reads. Thank you
___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists,
please use the interface at:
http://lists.bx.psu.edu/
--
Jennifer Jackson
http://usegalaxy.org
http://galaxyproject.org/Support
___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists,
please use the interface at:
http://lists.bx.psu.edu/
