galaxy-user

Messages by Date

2013/01/07 [galaxy-user] identify different number of differential expressed genes using ensemble or reseq GTF Wei Liao
2013/01/07 [galaxy-user] gene names from cuffdiff data Elwood Linney
2013/01/07 [galaxy-user] Trackster custom builds wrong Jennifer Hillman-Jackson
2013/01/07 Re: [galaxy-user] (no subject) Jennifer Hillman-Jackson
2013/01/07 [galaxy-user] Error Running CuffCompare on Galaxy Server Samit Watve
2013/01/07 [galaxy-user] How to get output images to appear in Galaxy Makis Ladoukakis
2013/01/06 [galaxy-user] joining two FASTq files with overlap reads shamsher jagat
2013/01/04 Re: [galaxy-user] Add new page server error Jeremy Goecks
2013/01/04 [galaxy-user] Add new page server error Aaron Stonestrom
2013/01/04 Re: [galaxy-user] galaxy test dataset listing James Taylor
2013/01/04 [galaxy-user] galaxy test dataset listing Sun, Wenping [USA]
2013/01/03 Re: [galaxy-user] Upload files from filesystem paths Ross
2013/01/03 Re: [galaxy-user] Upload files from filesystem paths Neil.Burdett
2013/01/03 Re: [galaxy-user] Upload files from filesystem paths Ross
2013/01/03 Re: [galaxy-user] Upload files from filesystem paths Neil.Burdett
2013/01/03 [galaxy-user] Building a combined annotated transcriptome to use as a reference annotation in RNA-Seq analysis Davide Degli Esposti
2013/01/02 Re: [galaxy-user] Upload files from filesystem paths Ross
2013/01/02 Re: [galaxy-user] Upload files from filesystem paths Neil.Burdett
2013/01/02 Re: [galaxy-user] [External] Re: galaxy cloudman login Dannon Baker
2013/01/02 Re: [galaxy-user] [External] Re: galaxy cloudman login Sun, Wenping [USA]
2013/01/02 Re: [galaxy-user] galaxy cloudman login Dannon Baker
2013/01/02 [galaxy-user] January 2013 Galaxy Update Dave Clements
2013/01/02 [galaxy-user] Seqpos output not visible in Safari/Firefox/Chrome Biswajyoti Sahu
2013/01/01 Re: [galaxy-user] Upload files from filesystem paths Ross
2013/01/01 [galaxy-user] Upload files from filesystem paths Neil.Burdett
2013/01/01 Re: [galaxy-user] incompatible frame Jennifer Jackson
2013/01/01 Re: [galaxy-user] Pipeline design for bacterial RNA-Seq Jennifer Jackson
2012/12/31 [galaxy-user] galaxy cloudman login Sun, Wenping [USA]
2012/12/30 [galaxy-user] running out of disk space in cloudman instance Siddhartha Basu
2012/12/29 [galaxy-user] Pipeline design for bacterial RNA-Seq Bernardo Bello
2012/12/27 [galaxy-user] incompatible frame Barbara Bryant
2012/12/27 Re: [galaxy-user] [External] Re: galaxy cluster nodes from the cloudlaunch site Sun, Wenping [USA]
2012/12/27 Re: [galaxy-user] [External] Re: galaxy cluster nodes from the cloudlaunch site dannonbaker
2012/12/27 Re: [galaxy-user] [External] Re: galaxy cluster nodes from the cloudlaunch site Sun, Wenping [USA]
2012/12/27 Re: [galaxy-user] [External] Re: galaxy cluster nodes from the cloudlaunch site dannonbaker
2012/12/27 Re: [galaxy-user] [External] Re: galaxy cluster nodes from the cloudlaunch site Sun, Wenping [USA]
2012/12/27 Re: [galaxy-user] [External] Re: galaxy cluster nodes from the cloudlaunch site dannonbaker
2012/12/27 Re: [galaxy-user] [External] Re: galaxy cluster nodes from the cloudlaunch site Sun, Wenping [USA]
2012/12/27 Re: [galaxy-user] [External] Re: galaxy cluster nodes from the cloudlaunch site Dannon Baker
2012/12/27 Re: [galaxy-user] [External] Re: galaxy cluster nodes from the cloudlaunch site Sun, Wenping [USA]
2012/12/27 Re: [galaxy-user] galaxy cluster nodes from the cloudlaunch site dannonbaker
2012/12/27 [galaxy-user] galaxy cluster nodes from the cloudlaunch site Sun, Wenping [USA]
2012/12/21 Re: [galaxy-user] How to display data at UCSC main? Daniel Blankenberg
2012/12/21 Re: [galaxy-user] How to display data at UCSC main? Jennifer Jackson
2012/12/20 [galaxy-user] Galaxy December 20, 2012 Distribution & News Brief Jennifer Jackson
2012/12/20 Re: [galaxy-user] [External] Re: galaxy cloudman login and aws instance Dannon Baker
2012/12/20 Re: [galaxy-user] [External] Re: galaxy cloudman login and aws instance Sun, Wenping [USA]
2012/12/20 Re: [galaxy-user] [External] Re: galaxy cloudman login and aws instance Dannon Baker
2012/12/20 Re: [galaxy-user] [External] Re: galaxy cloudman login and aws instance Sun, Wenping [USA]
2012/12/20 Re: [galaxy-user] [External] Re: galaxy cloudman login and aws instance Dannon Baker
2012/12/20 Re: [galaxy-user] [External] Re: galaxy cloudman login and aws instance Sun, Wenping [USA]
2012/12/20 Re: [galaxy-user] [External] Re: galaxy cloudman login and aws instance Dannon Baker
2012/12/20 Re: [galaxy-user] [External] Re: galaxy cloudman login and aws instance Sun, Wenping [USA]
2012/12/20 Re: [galaxy-user] galaxy cloudman login and aws instance Dannon Baker
2012/12/19 [galaxy-user] upload workflow on cloudman Sun, Wenping [USA]
2012/12/19 Re: [galaxy-user] add publicly available genomes? Jennifer Jackson
2012/12/19 Re: [galaxy-user] [External] Re: question on galaxy reference genome window Dannon Baker
2012/12/19 Re: [galaxy-user] [External] Re: question on galaxy reference genome window Sun, Wenping [USA]
2012/12/19 Re: [galaxy-user] Error in TopHat Sachit Adhikari
2012/12/19 [galaxy-user] Error in TopHat Sachit Adhikari
2012/12/19 Re: [galaxy-user] question on galaxy reference genome window Dannon Baker
2012/12/19 [galaxy-user] How to display data at UCSC main? Anna Vilborg
2012/12/19 [galaxy-user] question on galaxy reference genome window Sun, Wenping [USA]
2012/12/19 [galaxy-user] add publicly available genomes? Camilla Nesbo
2012/12/18 Re: [galaxy-user] How to Provide .gtf file to tophat2 greg
2012/12/18 Re: [galaxy-user] How to Provide .gtf file to tophat2 Jennifer Jackson
2012/12/18 [galaxy-user] How to Provide .gtf file to tophat2 greg
2012/12/18 Re: [galaxy-user] cufflinks analysis using .bam files generated by LifeScope (ABI 5500 Sequencer) Jennifer Jackson
2012/12/17 Re: [galaxy-user] cufflinks analysis using .bam files generated by LifeScope (ABI 5500 Sequencer) Jennifer Jackson
2012/12/17 Re: [galaxy-user] Galaxy Question Jennifer Jackson
2012/12/17 Re: [galaxy-user] Galaxy Question Jennifer Jackson
2012/12/17 [galaxy-user] Galaxy Question D. A. Cowart
2012/12/14 [galaxy-user] rice reference genome Jennifer Jackson
2012/12/14 Re: [galaxy-user] Bowtie index in data libraries Jennifer Jackson
2012/12/14 Re: [galaxy-user] Data library and symbolic link Jennifer Jackson
2012/12/14 [galaxy-user] Data library and symbolic link MONJEAUD
2012/12/14 [galaxy-user] Bowtie index in data libraries Anthony Bretaudeau
2012/12/13 [galaxy-user] cufflinks analysis using .bam files generated by LifeScope (ABI 5500 Sequencer) Davide Degli Esposti
2012/12/13 [galaxy-user] rice reference genome Jennifer Jackson
2012/12/13 Re: [galaxy-user] GATK Not running Farooq,Umar (res)
2012/12/12 Re: [galaxy-user] Should fastq files be merged? Jennifer Jackson
2012/12/12 Re: [galaxy-user] Link to display BED files in UCSC Genome Browser Jennifer Jackson
2012/12/12 Re: [galaxy-user] GATK Not running Daniel Blankenberg
2012/12/12 Re: [galaxy-user] GATK Not running Daniel Blankenberg
2012/12/12 Re: [galaxy-user] GATK Not running Daniel Blankenberg
2012/12/12 Re: [galaxy-user] [galaxy-dev] How to add to add hg16 index into the build-in index / reference gnome list? Jennifer Jackson
2012/12/12 [galaxy-user] How to add to add hg16 index into the build-in index / reference gnome list? Sachit Adhikari
2012/12/12 Re: [galaxy-user] Searching Galaxy Tool Shed gives error Greg Von Kuster
2012/12/12 [galaxy-user] Searching Galaxy Tool Shed gives error Joachim Jacob
2012/12/11 [galaxy-user] How to add a built-in index for Tophat2? Sachit Adhikari
2012/12/11 [galaxy-user] Galaxy doesn't detect the file when we add dataset to a library under Manage data libraries Sachit Adhikari
2012/12/11 Re: [galaxy-user] GATK Not running Farooq,Umar (res)
2012/12/11 Re: [galaxy-user] GATK Not running Joshua Orvis
2012/12/11 Re: [galaxy-user] GATK Not running Philipe Moncuquet
2012/12/11 [galaxy-user] Should fastq files be merged? Karen Margrethe Jessen
2012/12/11 Re: [galaxy-user] Sliding window to get average of a seq reads Jennifer Jackson
2012/12/11 Re: [galaxy-user] Windows function not working Jennifer Jackson
2012/12/11 Re: [galaxy-user] Tophat error. Jennifer Jackson
2012/12/11 [galaxy-user] GATK Not running Farooq,Umar (res)
2012/12/11 [galaxy-user] Link to display BED files in UCSC Genome Browser Lucy A. Skrabanek
2012/12/10 Re: [galaxy-user] Downloading the gene coordinates of the rice genome Loraine, Ann
2012/12/10 [galaxy-user] Trimming and thinning of paired-end reads Alicia R . Pérez-Porro
2012/12/10 [galaxy-user] Downloading the gene coordinates of the rice genome maheshi dassanayake
2012/12/10 Re: [galaxy-user] Compute sum per row Jennifer Jackson
2012/12/10 [galaxy-user] Using -q trimming options in bwa Aung-Kyaw Chi
2012/12/10 [galaxy-user] Compute sum per row Joachim Jacob
2012/12/09 [galaxy-user] Tophat error. Humberto Boncristiani
2012/12/07 [galaxy-user] Windows function not working shamsher jagat
2012/12/07 [galaxy-user] Sliding window to get average of a seq reads shamsher jagat
2012/12/07 Re: [galaxy-user] User stats Dave Clements
2012/12/07 [galaxy-user] conditional in Compute tool Ido Tamir
2012/12/06 Re: [galaxy-user] Tophat alignment statistics? Praveen Raj Somarajan
2012/12/06 Re: [galaxy-user] [galaxy-dev] Problem in Manage data Library Anthonius deBoer
2012/12/06 [galaxy-user] User stats Nicholas Beckloff
2012/12/06 [galaxy-user] Tophat alignment statistics? Wei Liao
2012/12/06 [galaxy-user] Problem in Manage data Library Sachit Adhikari
2012/12/05 Re: [galaxy-user] order of steps Jennifer Jackson
2012/12/05 [galaxy-user] order of steps Zhiqiang Shu
2012/12/05 Re: [galaxy-user] NGS SAM Tools: Filter Pileup tool not working Jennifer Jackson
2012/12/05 [galaxy-user] NGS SAM Tools: Filter Pileup tool not working Lanelle Oni Edwards
2012/12/05 Re: [galaxy-user] Barcode splitting Jennifer Jackson
2012/12/04 [galaxy-user] Trouble with KB1454chr5.bam, Bushman Chrm5, 454 data only Allan Lindh
2012/12/03 Re: [galaxy-user] Barcode splitting Philipe Moncuquet
2012/12/03 [galaxy-user] compare two dataset Ianiri, Giuseppe
2012/12/03 [galaxy-user] December 3, 2012 Distribution & News Brief Jennifer Jackson
2012/12/03 Re: [galaxy-user] NGS with Arabidopsis thaliana built-in-index Jennifer Jackson
2012/12/03 Re: [galaxy-user] how to download onto a server? Jennifer Jackson
2012/12/03 Re: [galaxy-user] extracting a subset of sequences from a very large fasta file(1.5 million) Jennifer Jackson
2012/12/03 [galaxy-user] Barcode splitting Rajarshi Ghosh
2012/12/03 [galaxy-user] how to download onto a server? Loraine, Ann
2012/12/03 [galaxy-user] Boxplot error. 柴田弘紀
2012/12/02 [galaxy-user] NGS with Arabidopsis thaliana built-in-index Tom Smith
2012/11/30 Re: [galaxy-user] dataset not visible Jennifer Jackson
2012/11/30 Re: [galaxy-user] History Pane empty? Jennifer Jackson
2012/11/30 Re: [galaxy-user] Analysis in queue but not running Dave Clements
2012/11/30 Re: [galaxy-user] extracting a subset of sequences from a very large fasta file(1.5 million) Peter Cock
2012/11/30 [galaxy-user] extracting a subset of sequences from a very large fasta file(1.5 million) Perumal Vijayan
2012/11/30 [galaxy-user] December 2012 Galaxy Update Dave Clements
2012/11/30 Re: [galaxy-user] Cuffdiff tracking file does not report all genes and trancrips from reference annotation? Jennifer Jackson
2012/11/30 [galaxy-user] "Metadata is being auto-detected" stuck in continuous loop Redvers Richard
2012/11/30 Re: [galaxy-user] User's information Peter Cock
2012/11/29 [galaxy-user] User's information Sachit Adhikari
2012/11/29 [galaxy-user] Cuffdiff without gene annotation Ianiri, Giuseppe
2012/11/29 [galaxy-user] How good is Galaxy as a data repository and for cross-experiment querying? Yuhao
2012/11/29 Re: [galaxy-user] filter for +/- 2-fold difference in expression levels Jennifer Jackson
2012/11/29 [galaxy-user] Cuffdiff tracking file does not report all genes and trancrips from reference annotation? Wei Liao
2012/11/29 [galaxy-user] trim adapters and other Zhiqiang Shu
2012/11/29 Re: [galaxy-user] filter for +/- 2-fold difference in expression levels Ianiri, Giuseppe
2012/11/29 Re: [galaxy-user] filter for +/- 2-fold difference in expression levels Jennifer Jackson
2012/11/29 Re: [galaxy-user] Clip doesn't see my FASTQ file Jennifer Jackson
2012/11/29 Re: [galaxy-user] Stitch Gene blocks return empty result??? Jennifer Jackson
2012/11/29 [galaxy-user] dataset not visible Ilse Vandecandelaere
2012/11/29 [galaxy-user] Data/history/user export and import Bossers, Alex
2012/11/29 [galaxy-user] filter for +/- 2-fold difference in expression levels Ianiri, Giuseppe
2012/11/29 [galaxy-user] Stitch Gene blocks return empty result??? 张坤山
2012/11/29 Re: [galaxy-user] Bismark Error: Data table named 'bismark_bs_indeces' is required by tool but not configured. Greg Von Kuster
2012/11/29 [galaxy-user] Bismark Error: Data table named 'bismark_bs_indeces' is required by tool but not configured. Sachit Adhikari
2012/11/28 Re: [galaxy-user] History Pane empty? Jennifer Jackson
2012/11/28 [galaxy-user] History Pane empty? jason gagliano
2012/11/28 [galaxy-user] Clip doesn't see my FASTQ file Stephen Eacker
2012/11/27 Re: [galaxy-user] combining two fastq files Jennifer Jackson
2012/11/27 Re: [galaxy-user] combining two fastq files Zhiqiang Shu
2012/11/27 Re: [galaxy-user] combining two fastq files Jennifer Jackson
2012/11/27 Re: [galaxy-user] combining two fastq files Peter Cock
2012/11/27 [galaxy-user] combining two fastq files shamsher jagat
2012/11/27 Re: [galaxy-user] Find out sense and antisense sequences Jennifer Jackson
2012/11/27 Re: [galaxy-user] Find out sense and antisense sequences Zhiqiang Shu
2012/11/26 Re: [galaxy-user] Find out sense and antisense sequences Everson,Richard
2012/11/26 Re: [galaxy-user] Find out sense and antisense sequences Zhiqiang Shu
2012/11/26 Re: [galaxy-user] Find out sense and antisense sequences Peter Cock
2012/11/26 [galaxy-user] Find out sense and antisense sequences Zhiqiang Shu
2012/11/26 Re: [galaxy-user] BWA mapping with index file from history Jennifer Jackson
2012/11/26 Re: [galaxy-user] Why is 'Filter pileup' not recegnising my 'Generate pileup' file? Jennifer Jackson
2012/11/26 [galaxy-user] Why is 'Filter pileup' not recegnising my 'Generate pileup' file? Jacqui Stockley
2012/11/26 [galaxy-user] BWA mapping with index file from history shamsher jagat
2012/11/25 [galaxy-user] New Galaxy CloudMan Release Enis Afgan
2012/11/21 [galaxy-user] help Dr. Mira A. Bisso
2012/11/20 [galaxy-user] Curious-- what does "You are currently viewing a deleted history!" mean? Bob Harris
2012/11/20 Re: [galaxy-user] Unmapped reads from tophat Ido Tamir
2012/11/16 Re: [galaxy-user] Local Install - Understanding Upload File Concept greg
2012/11/16 Re: [galaxy-user] Local Install - Understanding Upload File Concept Nate Coraor
2012/11/16 Re: [galaxy-user] Local Install - Understanding Upload File Concept Nate Coraor
2012/11/16 Re: [galaxy-user] Local Install - Understanding Upload File Concept greg
2012/11/16 Re: [galaxy-user] Local Install - Understanding Upload File Concept greg
2012/11/16 Re: [galaxy-user] Local Install - Understanding Upload File Concept Nate Coraor
2012/11/16 Re: [galaxy-user] Local Install - Understanding Upload File Concept greg
2012/11/16 Re: [galaxy-user] Local Install - Understanding Upload File Concept Nate Coraor
2012/11/16 [galaxy-user] Local Install - Understanding Upload File Concept greg
2012/11/16 Re: [galaxy-user] Galaxy server configuration - what is [server:main]? Dannon Baker
2012/11/16 [galaxy-user] Galaxy server configuration - what is [server:main]? greg
2012/11/15 Re: [galaxy-user] SNPeff on human genome Jennifer Jackson
2012/11/15 [galaxy-user] SNPeff on human genome David Sims
2012/11/14 Re: [galaxy-user] Help to identify variants with clinical/phenotype associations Jennifer Jackson
2012/11/14 Re: [galaxy-user] Repeated Error with Tophat Jennifer Jackson
2012/11/14 Re: [galaxy-user] Map with Bowtie problem Jennifer Jackson
2012/11/14 [galaxy-user] Galaxy November 14, 2012 Distribution & News Brief Jennifer Jackson
2012/11/14 Re: [galaxy-user] Downgrading toolshed tools Greg Von Kuster
2012/11/14 [galaxy-user] Downgrading toolshed tools Paul-Michael Agapow
2012/11/14 [galaxy-user] Repeated Error with Tophat Karen Sears
2012/11/14 [galaxy-user] Map with Bowtie problem [email protected]