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Hello,
Chromosome names will need to be modified once the file is imported, as
explained in #5 of the FAQ:
http://usegalaxy.org/u/jeremy/p/transcriptome-analysis-faq
Hopefully this helps,
Best,
Jen
Galaxy team
On 9/15/11 8:22 PM, shamsher jagat wrote:
I have related question If I have to use Ensembl mouse GTF file
(Mus_musculus.NCBIM37.64) Do I have to download and reformat it or
Galaxy can take it from the source directly?
Thanks
On Sun, Aug 28, 2011 at 8:50 AM, Peng, Tao <tp...@fhcrc.org
<mailto:tp...@fhcrc.org>> wrote:
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__
Hi how can I specify a GTF gene annotation file when running tophat
to guide the alignment to human genome? What is the best way to
visualize the tophat results in the context of annotated human
genome, i.e. RefSeq?
Thanks,
tao
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___________________________________________________________
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