Hi Jen,
Yes, it is best to assume I know nothing about programming. I installed
Mercurial, but don't know how to check that it was successful other than it
said so. Removing % helped, but said I do not have permission:
Install Galaxy on Mac OS10.7
1. Open Applications/Utilities/Terminal.app
2. Check Python version by pasting in "python -V", no quotes, and hit return
response = Python 2.7.1
3. Install Mercurial
Response = "Successful Installation" but I don't know how to check this
4. Get Galaxy by pasting in "hg clone
https://bitbucket.org/galaxy/galaxy-dist/";, no quotes, and hit return
Response = warning: bitbucket.org certificate with fingerprint
24:9c:45:8b:9c:aa:ba:55:4e:01:6d:58:ff:e4:28:7d:2a:14:ae:3b not verified (check
hostfingerprints or web.cacerts config setting)
destination directory: galaxy-dist
abort: Permission denied: /private/etc/galaxy-dist
Thanks,
Edward
On Aug 10, 2012, at 11:36 AM, Jennifer Jackson wrote:
> Hi Edward -
>
> This may sound very simple, but did the "%" get included in the command to do
> the download by mistake? You'll want to remove that from the command string
> run again (was used to note the terminal prompt, is not a part of the
> command). So, just this:
>
> prompt$ hg clone https://bitbucket.org/galaxy/galaxy-dist/
>
> I just tested the galaxy-dist repository and there are no issues at bitbucket
> (right now). So, otherwise the MAC install should be fine.
>
> Maybe this helps?
>
> Jen
> Galaxy team
>
> On 8/10/12 8:00 AM, Edward Turk wrote:
>> Both responses worked for checking python version, but trying to
>> download gave an error:
>>
>> Install Galaxy on Mac OS10.7
>> 1. Open Applications/Utilities/Terminal.app
>> 2. Check Python version by pasting in "python -V", no quotes, and hit return
>> *response = Python 2.7.1*
>> 3. Get Galaxy by pasting in "% hg clone
>> https://bitbucket.org/galaxy/galaxy-dist/";, no quotes, and hit return
>> *response = -bash: fg: %: no such job*
>> On Aug 10, 2012, at 8:58 AM, Hotz, Hans-Rudolf wrote:
>>
>>> Hi Edward
>>>
>>> I am moving your e-mail to 'galaxy-dev' since it's about a local Galaxy
>>> instance.
>>>
>>> I don't think there are any differences between installing Galaxy on
>>> Linux and Mac OS X. Hence you can follow the step-by-step instructions
>>> on the wiki (well, there are actually only two steps anyway...):
>>>
>>> http://wiki.g2.bx.psu.edu/Admin/Get%20Galaxy
>>>
>>>
>>> WRT checking the python version:
>>>
>>> just type 'python -V' on the command line, eg on my old MacBook:
>>>
>>> bash-3.2$ python -V
>>> Python 2.5.1
>>> bash-3.2$
>>>
>>>
>>> Hope this helps
>>> Regards, Hans
>>>
>>>
>>>
>>> On 08/10/2012 02:37 PM, Edward Turk wrote:
>>>> Hello,
>>>> Could someone provide instructions for installing galaxy on a Mac OS
>>>> 10.7? The
>>> instructions provided by galaxy start off by asking me to check my python
>>> version, but I don't know how to do that. I figure someone has
>>> step-by-step
>>> instructions or a screen cast?
>>>> Thank you,
>>>> Edward
>>>> ___________________________________________________________
>>>> The Galaxy User list should be used for the discussion of
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>>>> using "reply all" in your mail client. For discussion of
>>>> local Galaxy instances and the Galaxy source code, please
>>>> use the Galaxy Development list:
>>>>
>>>> http://lists.bx.psu.edu/listinfo/galaxy-dev
>>>>
>>>> To manage your subscriptions to this and other Galaxy lists,
>>>> please use the interface at:
>>>>
>>>> http://lists.bx.psu.edu/
>>>>
>>>
>>
>>
>>
>> ___________________________________________________________
>> The Galaxy User list should be used for the discussion of
>> Galaxy analysis and other features on the public server
>> at usegalaxy.org. Please keep all replies on the list by
>> using "reply all" in your mail client. For discussion of
>> local Galaxy instances and the Galaxy source code, please
>> use the Galaxy Development list:
>>
>> http://lists.bx.psu.edu/listinfo/galaxy-dev
>>
>> To manage your subscriptions to this and other Galaxy lists,
>> please use the interface at:
>>
>> http://lists.bx.psu.edu/
>>
>
> --
> Jennifer Jackson
> http://galaxyproject.org
___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists,
please use the interface at:
http://lists.bx.psu.edu/
