Thanks Jen, Hans, and Scott,
I have it running on my laptop now and here are the steps I followed:
Install Galaxy on MacBook Pro OS10.7.4 (08-10-2012)
• Install Mercurial http://mercurial.selenic.com/wiki/
• Open Applications/Utilities/Terminal.app
• Confirm Mercurial installation by pasting in "hg version", no quotes
and hit return
response = version 2.3+20120807
• Check Python version by pasting in "python -V", no quotes and hit
return
response = Python 2.7.1
• Go to your home directory by pasting in "cd", no quotes and hit return
• Get Galaxy by pasting in "hg clone
http://bitbucket.org/galaxy/galaxy-dist/";, no quotes and hit return
• Go to the Galaxy directory by pasting in "cd galaxy-dist", no quotes
and hit return
• Start up Galaxy by pasting in "sh run.sh", no quotes and hit return
• Open web browser and paste in “http://localhost:8080”, no quotes and
hit return
Have a nice day,
Edward
On Aug 10, 2012, at 1:41 PM, Jennifer Jackson wrote:
> Update (and a post to both lists!)
>
> Nate pointed me to the real problem. https/http isn't a problem at bitbucket
> anymore. The issue is where you are installing (/etc) and write permissions.
> But, it is not recommended anyway. You will want to install in your home
> directory. To get there, type:
>
> prompt$ cd
>
> Just that will put you in your home. To see where this is on your system
> path, type this:
>
> prompt$ pwd
>
> To see what else is here, type:
>
> prompt$ ls
>
>
> A google for mac unix commands will bring up various basic help/tutorials and
> such as you need them.
>
> Hopefully this gets you going!
>
> Jen
> Galaxy team
>
> On 8/10/12 9:59 AM, Jennifer Jackson wrote:
>> Hi Edward,
>>
>> Sorry, the "https" is probably also a problem. I thought about
>> commenting about that before, but was wasn't sure about how much help
>> you would need exactly or if you were logged into bitbucket or not. So
>> please use this:
>>
>> prompt$ hg clone http://bitbucket.org/galaxy/galaxy-dist
>>
>> If you ever need to clone again or update, the commands are in the News
>> Brief summaries + top of each full report:
>> http://wiki.g2.bx.psu.edu/DevNewsBriefs
>>
>> ** Note the "%" is used here to designate the terminal prompt. This is
>> fairly common, so now that you know, you will be able to recognize it.
>> Also look for the "$" and ">" characters to represent the prompt at the
>> start of a shared command line in various documents (Galaxy or other).
>> I'll just use "prompt$" right now to be clear.
>>
>> For Mercurial, to confirm the install, you can type at the terminal
>> prompt from anywhere:
>>
>> prompt$ hg version
>> prompt$ hg help
>>
>> The "quick start" and "guide" at http://mercurial.selenic.com/ is a good
>> place for basic hg commands. A web search will return plenty of other
>> choices.
>>
>> This is the last email in this thread I think we should send to both
>> lists - from here forward let's just cc to galaxy-...@bx.psu.edu for
>> follow-up and leave the user list off - no need to post to both. The
>> other question about MAC resource we can do the same with, once answered.
>>
>> Best,
>>
>> Jen
>> Galaxy team
>>
>> On 8/10/12 8:53 AM, Edward Turk wrote:
>>> Hi Jen,
>>>
>>> Yes, it is best to assume I know nothing about programming. I installed
>>> Mercurial, but don't know how to check that it was successful other than
>>> it said so. Removing % helped, but said I do not have permission:
>>>
>>> Install Galaxy on Mac OS10.7
>>> 1. Open Applications/Utilities/Terminal.app
>>> 2. Check Python version by pasting in "python -V", no quotes, and hit
>>> return
>>> *response = Python 2.7.1*
>>> 3. Install Mercurial
>>> *Response = "Successful Installation" but I don't know how to check
>>> this *
>>> 4. Get Galaxy by pasting in "hg clone
>>> https://bitbucket.org/galaxy/galaxy-dist/";, no quotes, and hit return
>>> *Response = warning: bitbucket.org <http://bitbucket.org> certificate
>>> with fingerprint
>>> 24:9c:45:8b:9c:aa:ba:55:4e:01:6d:58:ff:e4:28:7d:2a:14:ae:3b not verified
>>> (check hostfingerprints or web.cacerts config setting)*
>>> *destination directory: galaxy-dist*
>>> *abort: Permission denied: /private/etc/galaxy-dist*
>>>
>>> Thanks,
>>> Edward
>>> On Aug 10, 2012, at 11:36 AM, Jennifer Jackson wrote:
>>>
>>>> Hi Edward -
>>>>
>>>> This may sound very simple, but did the "%" get included in the
>>>> command to do the download by mistake? You'll want to remove that from
>>>> the command string run again (was used to note the terminal prompt, is
>>>> not a part of the command). So, just this:
>>>>
>>>> prompt$ hg clone https://bitbucket.org/galaxy/galaxy-dist/
>>>>
>>>> I just tested the galaxy-dist repository and there are no issues at
>>>> bitbucket (right now). So, otherwise the MAC install should be fine.
>>>>
>>>> Maybe this helps?
>>>>
>>>> Jen
>>>> Galaxy team
>>>>
>>>> On 8/10/12 8:00 AM, Edward Turk wrote:
>>>>> Both responses worked for checking python version, but trying to
>>>>> download gave an error:
>>>>>
>>>>> Install Galaxy on Mac OS10.7
>>>>> 1. Open Applications/Utilities/Terminal.app
>>>>> 2. Check Python version by pasting in "python -V", no quotes, and hit
>>>>> return
>>>>> *response = Python 2.7.1*
>>>>> 3. Get Galaxy by pasting in "% hg clone
>>>>> https://bitbucket.org/galaxy/galaxy-dist/";, no quotes, and hit return
>>>>> *response = -bash: fg: %: no such job*
>>>>> On Aug 10, 2012, at 8:58 AM, Hotz, Hans-Rudolf wrote:
>>>>>
>>>>>> Hi Edward
>>>>>>
>>>>>> I am moving your e-mail to 'galaxy-dev' since it's about a local
>>>>>> Galaxy
>>>>>> instance.
>>>>>>
>>>>>> I don't think there are any differences between installing Galaxy on
>>>>>> Linux and Mac OS X. Hence you can follow the step-by-step instructions
>>>>>> on the wiki (well, there are actually only two steps anyway...):
>>>>>>
>>>>>> http://wiki.g2.bx.psu.edu/Admin/Get%20Galaxy
>>>>>>
>>>>>>
>>>>>> WRT checking the python version:
>>>>>>
>>>>>> just type 'python -V' on the command line, eg on my old MacBook:
>>>>>>
>>>>>> bash-3.2$ python -V
>>>>>> Python 2.5.1
>>>>>> bash-3.2$
>>>>>>
>>>>>>
>>>>>> Hope this helps
>>>>>> Regards, Hans
>>>>>>
>>>>>>
>>>>>>
>>>>>> On 08/10/2012 02:37 PM, Edward Turk wrote:
>>>>>>> Hello,
>>>>>>> Could someone provide instructions for installing galaxy on a Mac OS
>>>>>>> 10.7? The
>>>>>> instructions provided by galaxy start off by asking me to check my
>>>>>> python
>>>>>> version, but I don't know how to do that. I figure someone has
>>>>>> step-by-step
>>>>>> instructions or a screen cast?
>>>>>>> Thank you,
>>>>>>> Edward
>>>>>>> ___________________________________________________________
>>>>>>> The Galaxy User list should be used for the discussion of
>>>>>>> Galaxy analysis and other features on the public server
>>>>>>> at usegalaxy.org <http://usegalaxy.org>. Please keep all replies
>>>>>>> on the list by
>>>>>>> using "reply all" in your mail client. For discussion of
>>>>>>> local Galaxy instances and the Galaxy source code, please
>>>>>>> use the Galaxy Development list:
>>>>>>>
>>>>>>> http://lists.bx.psu.edu/listinfo/galaxy-dev
>>>>>>>
>>>>>>> To manage your subscriptions to this and other Galaxy lists,
>>>>>>> please use the interface at:
>>>>>>>
>>>>>>> http://lists.bx.psu.edu/
>>>>>>>
>>>>>>
>>>>>
>>>>>
>>>>>
>>>>> ___________________________________________________________
>>>>> The Galaxy User list should be used for the discussion of
>>>>> Galaxy analysis and other features on the public server
>>>>> at usegalaxy.org <http://usegalaxy.org>. Please keep all replies on
>>>>> the list by
>>>>> using "reply all" in your mail client. For discussion of
>>>>> local Galaxy instances and the Galaxy source code, please
>>>>> use the Galaxy Development list:
>>>>>
>>>>> http://lists.bx.psu.edu/listinfo/galaxy-dev
>>>>>
>>>>> To manage your subscriptions to this and other Galaxy lists,
>>>>> please use the interface at:
>>>>>
>>>>> http://lists.bx.psu.edu/
>>>>>
>>>>
>>>> --
>>>> Jennifer Jackson
>>>> http://galaxyproject.org
>>>
>>
>
> --
> Jennifer Jackson
> http://galaxyproject.org
___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists,
please use the interface at:
http://lists.bx.psu.edu/
