Hello Naveed,
The public Main Galaxy instance at https://main.g2.bx.psu.edu
(usegalaxy.org) has been very busy for the last week or so. NGS jobs,
such as BWA/Bowtie mapping jobs, are among those that have the longest
queue times.
The best strategy is to launch the most important jobs first, then leave
them completely alone in the grey "waiting to run" state until they
execute and complete. Stopping/restarting a job effectively loses your
prior placement in the queue and moves the job to the end.
Jobs are distributed evenly among all users. To keep this fair, and
prevent misuse, when more than one account is detected for a user, all
accounts are deleted. This monitoring occurs at regular, frequent
intervals:
http://main.g2.bx.psu.edu/static/terms.html
http://wiki.galaxyproject.org/Main#User_data_and_job_quotas
If your work is very urgent, then a local or cloud instance is
recommended. Another public Galaxy site could also be an option if it
has the tools you need, but each is different and you will need to
review/test if they fit your needs. This wiki has links with more
information about all of these options:
http://wiki.galaxyproject.org/Big%20Picture/Choices
I included a bit more information here than usual, since I know that
many users are also experiencing delays, and this reply will likely be
helpful for them as well. I can let you know that we are aware that this
situation is not ideal and also that we are actively working on a
strategy to better accommodate peak usage going forward. The public Main
instance will never be able to handle all of everyone's analysis needs
(world wide!), no single system ever could, but some improvements are
possible and will be deployed in the near term.
Take care,
Jen
Galaxy team
On 1/24/13 5:42 AM, naveed ahmed wrote:
Dear Sir/Madam
Greetings,
This is to inform you that i am the user of galaxy user with an user id
naveed...@yahoo.com
where as when i run NGS Mapping, for my sample with BWA or Bowtie
illumina, it keep on job waiting for more than 24-48hrs, even though the
time pass the application is not working. I tried with other samples
even though the problem is persisting.
Concerning this i request you to let me how to solve this problem.
your return confirmation would be highly appreciable...
with warm regards
*Naveed Ahmed Syed *
*
*email: naveed...@yahoo.com
*
*P****Reduce, Reuse, Recycle, Respect - Think before you print**.*
*
___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists,
please use the interface at:
http://lists.bx.psu.edu/
--
Jennifer Hillman-Jackson
Galaxy Support and Training
http://galaxyproject.org
___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists,
please use the interface at:
http://lists.bx.psu.edu/
