Hello, The Table browser will provide this type of information. The general path would be to: 1) open the tool to the target assembly 2) set the group/track as UCSC Genes 3) paste or unload your identifiers 4) set output as "selected fields from primary and related tables" 5) link in associated data as desired (kgXref and kgAlias are suggested) 6) name and download output and/or save back as a custom track.
Instructions with examples for the Table browser: http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html#TableBrowser Thank you, Jennifer ------------------------------------------------ Jennifer Jackson UCSC Genome Bioinformatics Group ----- "Hamwi Iyas" <[email protected]> wrote: > From: "Hamwi Iyas" <[email protected]> > To: [email protected] > Cc: [email protected] > Sent: Thursday, September 3, 2009 10:19:58 AM GMT -08:00 US/Canada Pacific > Subject: [Genome] Question about > > Dear Sir or Madame, > > I would like to know whether it is possible to reannotate gene > sequence > localisations > annotated with the ucsc code e.g. uc001abp into gene bank annotations > like BC102012. > Just by typing uc001abp into google I will find a match that will > give > me the exact > gene bank match in this case BC102012. Since I have about 14.000 of > these > annotations that I want to reannotate I would like to know if there is > a > table including > both annotations. The site that provides this comparison is ucsc > browser, that > is why I am turning to you. > Can you help me? > > Many thanks in advance, > > Iyas Hamwi > > Iyas Hamwi > Medical School Hannover > Department of Hematology and Oncology > Carl Neuberg st. 1 > 30625 Hannover (Germany) > Tel.: 0511 532 9782 > email: [email protected] > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
