Hi Jiang, The ensembl transcript id is different than the RefSeq ID.
You can use the table browser to get the gene symbol that corresponds with the emsembl ID. Click on "Tables" in the blue menu bar at the top of the page. Chose the clade, genome and assembly of your choice (e.g. Mammal; Human; Mar.2006) and make these additional selections: group: Genes and Gene Prediction Tracks track: Ensembl Genes table: ensGene region: genome (or select "position" and enter your position of interest in the adjacent field) output format: selected fields from primary and related tables Click "get output" Select "name" from the ensGene fields and then select "ccdsInfo" from the section called Linked Tables. Click the "Allow Selection From Checked Tables" button at the bottom of the page. Now, scroll back down to the Linked Tables section, select "kgXref" and click the "Allow Selection From Checked Tables" button again. Select the "geneSymbol" field from the kgXref field list and scroll back up to the top of the page. Click "get output." Your results should be a list of the Ensembl transcript IDs with the associate gene symbol where applicable. Please don't hesitate to contact the mail list again if you have any further questions. Katrina Learned UCSC Genome Bioinformatics Group chunjiang he wrote: > hi, > I have a question want to ask you. Are ensembl transcript id more than > Refseq ID? So that means the ensembl transcripts are more than refseq > transcript? And I want to connect the ensembl ID and gene symbol but I can't > find the file. Can you help me? > Thanks, > Jiang > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
