Hi jpd,

The liftOver utility doesn't currently support wig files, however, 
please see this previously answered mailing list question for 
information on how to convert from wiggle format to BedGraph format for 
use with the liftOver tool:

https://lists.soe.ucsc.edu/pipermail/genome/2008-July/016841.html

I hope his information is helpful. Please don't hesitate to contact the 
mail list again if you have any further questions.

Katrina Learned
UCSC Genome Bioinformatics Group


jp d wrote:
> hi,
> is there a program that will liftOver a wig file?
>
> thanks
> jpd
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