Hi Angie and Jake, That is right (I replied to the original email but forgot to CC everyone).
Best, Pouya On 11/20/2009 06:17 PM, Angie Hinrichs wrote: > Hi Jake, > > The 15-way is the only alignment that we produced that included the 12 flies, > so I believe the 15-way was used -- perhaps the non-fly lines were stripped > from the MAF file (easy to do with grep -v) or just ignored. But Pouya et > al. at Broad should be able to tell you more definitively. > > Angie > > ----- "Jacob Biesinger"<[email protected]> wrote: > >> From: "Jacob Biesinger"<[email protected]> >> To: [email protected], "Pouya Kheradpour"<[email protected]> >> Sent: Friday, November 20, 2009 12:30:38 PM GMT -08:00 US/Canada Pacific >> Subject: [Genome] 12 way alignment for Drosophila? >> >> Hi! >> >> In reading Reliable prediction of regulator targets using 12 Drosophila >> genomes (Genome Research, 2007), the authors say that a 12-way alignment is >> available for D. melanogaster. Yet all I've been able to find are the >> 15-way (including red flour beetle, mosquito, and honey bee), and alignments >> with 9 or fewer species. Is there really a 12-way alignment? Or did the >> authors just use the 15-way? >> >> Thanks! >> -- >> Jake Biesinger >> Graduate Student >> UC Irvine >> (949) 231-7587 >> _______________________________________________ >> Genome maillist - [email protected] >> https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
