Via CVS: http://genome.ucsc.edu/admin/cvs.html or zip file: http://hgdownload.cse.ucsc.edu/admin/jksrc.zip
Build instructions: http://genome.ucsc.edu/admin/jk-install.html Make sure you also read the source tree files: src/product/README.* Let me know if any of that README information needs any update. --Hiram Blanchette, Marco wrote: > I could give it a shot! I couldn't find the source code anywhere. > > > On 11/21/09 6:17 PM, "Hiram Clawson" <[email protected]> wrote: > > I don't know. Do you want to build these things in your > own environment ? > > --Hiram > > Blanchette, Marco wrote: >> Ha! Working! >> >> Thanks Hiram! >> >> Do you think that there is chances that I might run outside the allocatable >> memory of the 32bit application? >> >> >> On 11/21/09 6:04 PM, "Hiram Clawson" <[email protected]> wrote: >> >> Good Afternoon Marco: >> >> Please try the following binaries: >> http://genome-test.cse.ucsc.edu/admin/exe/macOSX.i386/ >> >> to see if you have better luck. >> >> --Hiram >> >> Blanchette, Marco wrote: >>> Thanks Jim for the rapid answer. The binary seems to work under Snow >>> Leopard Sever 10.6.2. However, I think that something is broken... >>> >>> When I generated the bigWig from example 2 from >>> http://genome.ucsc.edu/goldenPath/help/bigWig.html >>> I created a bigFile that triggers some error from the Genome browser. >>> >>> This seems to be specific for the Darwin binary in the bigSuit.zip as if I >>> do the same procedure using the downloaded binary on a linux box, the >>> bigWig file is fine. >>> >>> Moreover, the file generated by the bedGraph2bigWig on the Xserver is 16 MB >>> large while the file generated on the linux box is 78 Mb large. >>> >>> Any clue? >>> >>> >>> On 11/21/09 2:58 PM, "Jim Kent" <[email protected]> wrote: >>> >>> Hi - I just put them in the file in >>> http://hgwdev.cse.ucsc.edu/~kent/exe/macIntel/bigSuite.zip >>> >>> On Nov 21, 2009, at 12:44 PM, Blanchette, Marco wrote: >>> >>>> Are the source code for the newly developed Bed and Wig file >>>> manipulation tools available for non-Linux user? Is there a way to >>>> get them running on other *nix boxes (Darwin for instance!). >>>> >>>> We are running our pipelines on an Xserver and I would love to be >>>> able to use the bedGraphToBigWig application! >>>> >>>> Thanks >>>> -- >>>> Marco Blanchette, Ph.D. >>>> Assistant Investigator >>>> Stowers Institute for Medical Research >>>> 1000 East 50th St. >>>> >>>> Kansas City, MO 64110 >>>> >>>> Tel: 816-926-4071 >>>> Cell: 816-726-8419 >>>> Fax: 816-926-2018 >>>> >>>> _______________________________________________ >>>> Genome maillist - [email protected] >>>> https://lists.soe.ucsc.edu/mailman/listinfo/genome >>> >>> -- >>> Marco Blanchette, Ph.D. >>> Assistant Investigator >>> Stowers Institute for Medical Research >>> 1000 East 50th St. >>> >>> Kansas City, MO 64110 >>> >>> Tel: 816-926-4071 >>> Cell: 816-726-8419 >>> Fax: 816-926-2018 >>> >>> _______________________________________________ >>> Genome maillist - [email protected] >>> https://lists.soe.ucsc.edu/mailman/listinfo/genome >>> >> >> -- >> Marco Blanchette, Ph.D. >> Assistant Investigator >> Stowers Institute for Medical Research >> 1000 East 50th St. >> >> Kansas City, MO 64110 >> >> Tel: 816-926-4071 >> Cell: 816-726-8419 >> Fax: 816-926-2018 >> > > > -- > Marco Blanchette, Ph.D. > Assistant Investigator > Stowers Institute for Medical Research > 1000 East 50th St. > > Kansas City, MO 64110 > > Tel: 816-926-4071 > Cell: 816-726-8419 > Fax: 816-926-2018 > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
