Hello David, The reason for the missing data is that for hg19, dbSNP has not yet released the data for chrM. The mito chromosome is identical between hg18 and hg19, so using the hg18 chrM data along with the rest of the data from hg19 would give you the complete set for now. We are expecting the data for chrM updated in dbSNP release 130 for hg19 in the next few months.
Thanks, Jennifer ------------------------------------------------ Jennifer Jackson UCSC Genome Bioinformatics Group ----- "David Gordon" <[email protected]> wrote: > From: "David Gordon" <[email protected]> > To: [email protected] > Sent: Thursday, December 3, 2009 11:58:38 AM GMT -08:00 US/Canada Pacific > Subject: [Genome] mitochondrial snps > > Human mitochondria is known to contain many snps. However, the > Genome > Browser as well as the downloaded file snp130.txt show no > mitochondrial snps. Am I mistaken? Is there somewhere else on the > UCSC website where human mitochondrial snps may be downloaded? > > > Thanks in advance, > David Gordon > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
